Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 0.0e+00 2051.2 1181 100.0
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 0.0e+00 1265.0 934 83.8
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 0.0e+00 1256.1 1221 62.2
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 0.0e+00 1219.1 1181 61.5
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 6.2e-270 934.9 1268 48.2
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 6.4e-267 924.9 1243 47.9
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 6.4e-267 924.9 1243 47.9
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 1.8e-248 863.6 1218 48.4
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 5.3e-245 852.0 1014 54.2
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 1.9e-242 843.6 1536 41.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.0e-175 620.9 1223 39.7
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 3.3e-170 603.6 1401 35.3
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.3e-162 577.0 1375 34.9
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 7.5e-159 565.8 1420 33.8
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.3e-139 501.1 867 41.8
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 3.0e-139 500.7 1402 31.1
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 1.8e-136 491.5 1403 31.8
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.9e-133 481.5 1390 38.5
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 1.9e-130 471.5 1455 30.9
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 9.6e-130 469.2 1396 38.1
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 3.7e-129 467.2 1385 30.7
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 7.6e-127 459.5 1254 32.6
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 9.9e-127 459.1 1421 34.1
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 1.4e-125 455.3 1345 30.4
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 1.9e-125 454.9 1344 33.6
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 4.6e-124 450.3 1287 33.0
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.0e-123 449.1 1430 30.1
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 5.1e-123 446.8 1358 32.3
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.1e-122 445.7 1416 30.4
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.5e-122 445.3 477 53.9
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 4.8e-121 440.3 1357 31.8
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.6e-119 434.5 1357 31.7
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 6.5e-118 429.9 1402 29.4
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 2.5e-117 427.9 1371 30.2
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 4.2e-117 427.2 1355 33.9
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.6e-116 425.2 1368 30.1
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 2.1e-116 424.9 481 52.4
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 4.6e-116 423.7 1110 34.1
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 1.9e-114 418.3 1376 30.5
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.3e-114 417.5 1349 29.7
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 5.7e-114 416.8 1360 30.8
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 2.0e-111 408.3 1231 30.4
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.7e-110 405.2 1231 30.3
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.9e-109 401.7 1329 29.5
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 5.5e-109 400.2 291 78.7
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.1e-107 393.7 1334 28.9
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 2.5e-106 391.3 1372 29.2
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 2.2e-102 378.3 1412 28.6
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 3.0e-99 367.9 477 45.1
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.2e-97 359.8 476 44.7
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 1.2e-95 355.9 1211 28.5
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 4.7e-92 344.0 1349 28.3
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 4.7e-92 344.0 1344 27.7
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.8e-91 342.0 1268 29.3
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 2.3e-91 341.7 1230 28.3
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 1.1e-90 339.3 1216 28.5
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 1.5e-90 339.0 1231 28.4
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 1.5e-90 339.0 1231 28.4
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 2.0e-90 338.6 1236 27.7
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 5.7e-90 337.0 1213 28.4
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 6.3e-89 333.6 1293 29.1
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 4.1e-88 330.9 1232 28.2
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 5.3e-88 330.5 1381 26.4
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 9.1e-88 329.7 1323 27.7
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.6e-87 328.2 415 46.7
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 3.5e-87 327.8 415 46.5
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 1.2e-84 319.3 1221 27.5
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 1.6e-84 318.9 1349 28.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.4e-83 315.8 468 41.2
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 1.2e-82 312.8 1340 26.9
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 2.0e-82 312.0 1252 26.9
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 1.4e-80 305.8 1278 27.5
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 9.1e-80 303.1 345 48.1
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 1.6e-79 302.4 1324 26.2
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 5.5e-77 293.9 471 38.0
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 8.0e-76 290.0 1260 28.3
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 8.0e-76 290.0 1343 28.3
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.4e-75 289.3 1300 27.1
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.4e-75 289.3 472 37.1
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 1.8e-75 288.9 1394 25.5
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 6.8e-75 287.0 419 44.2
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 1.2e-74 286.2 1347 26.7
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.6e-71 275.8 1377 25.5
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 1.1e-69 269.6 1341 26.1
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 9.5e-69 266.5 468 38.2
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 6.1e-68 263.8 393 41.0
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 1.8e-67 262.3 1261 26.2
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 8.9e-67 260.0 1318 25.4
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.4e-64 251.9 368 42.7
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.4e-64 251.9 416 41.6
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 5.9e-63 247.3 1114 27.0
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.1e-61 243.0 1278 26.1
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 3.3e-61 241.5 409 38.4
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 4.0e-59 234.6 1401 23.9
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 6.8e-59 233.8 402 40.0
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.8e-58 230.7 1312 25.1
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.3e-57 229.6 447 35.8
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 8.3e-57 226.9 415 36.6
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.1e-56 226.5 407 35.6
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 1.3e-54 219.5 1275 25.0
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 5.0e-54 217.6 485 33.0
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.9e-53 215.7 278 46.4
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 2.5e-53 215.3 447 34.7
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.6e-52 212.6 278 44.6
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 2.3e-51 208.8 154 63.6
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 4.4e-50 204.5 312 40.1
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 5.4e-48 197.6 300 46.7
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.7e-46 192.6 1209 23.5
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 5.1e-46 191.0 397 32.5
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.5e-45 189.5 773 26.6
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 7.3e-45 187.2 1288 24.1
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 8.3e-41 173.7 401 31.7
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 9.2e-40 170.2 291 43.6
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 1.4e-35 156.4 181 49.7
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 4.2e-32 144.8 88 78.4
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 8.1e-28 130.6 272 39.7
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 6.9e-27 127.5 145 43.4
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 6.4e-25 120.9 129 51.9
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 6.4e-25 120.9 124 51.6
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 1.8e-19 102.8 100 50.0
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.9e-14 85.1 354 28.0
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 5.6e-13 81.3 260 29.2
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.4e-11 76.6 122 37.7
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 4.5e-10 71.6 353 26.9
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 2.9e-09 68.9 128 40.6
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 2.9e-09 68.9 128 40.6
SEGI_34464 Sequoiadendron giganteum HOM05D005171 ORTHO05D030606 4.9e-09 68.2 145 26.9
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.1e-08 67.0 80 45.0
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.4e-08 66.6 105 37.1
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 7.1e-08 64.3 119 39.5
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 7.1e-08 64.3 254 29.5
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.2e-07 63.5 113 37.2
arahy.Tifrunner.gnm1.ann1.PMM024 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.7e-07 62.4 58 55.2
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 2.7e-07 62.4 89 36.0
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 2.7e-07 62.4 89 36.0
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 7.9e-07 60.8 101 47.5
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.0e-06 60.5 70 44.3
VMungo0464G0790 Vigna mungo HOM05D002691 ORTHO05D026216 3.9e-06 58.5 36 75.0


User provided reference genes

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