Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.3e-287 991.5 488 100.0
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 5.5e-265 917.1 489 92.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.6e-251 872.5 480 89.6
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.3e-242 842.8 488 84.0
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 3.6e-240 834.7 488 84.4
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.1e-236 823.2 485 84.1
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 4.3e-233 811.2 488 82.0
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.0e-226 788.5 483 82.0
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 3.6e-216 755.0 481 79.6
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 7.6e-206 720.7 462 79.2
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.5e-201 706.4 483 74.1
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.3e-201 705.3 490 72.0
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 8.1e-200 700.7 485 72.8
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.4e-199 699.1 490 72.2
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 5.3e-199 698.0 487 72.9
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.6e-198 695.7 478 72.6
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.7e-197 693.0 479 72.2
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 2.9e-197 692.2 488 70.9
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 6.4e-197 691.0 499 72.3
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.1e-196 690.3 478 72.6
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 5.4e-196 688.0 477 72.7
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.0e-194 683.7 483 71.4
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 1.1e-193 680.2 485 71.1
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.9e-193 679.5 479 73.1
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.8e-191 672.9 486 72.0
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.8e-191 672.9 483 71.0
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 9.0e-191 670.6 493 69.6
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.7e-189 666.4 493 69.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 3.8e-189 665.2 494 69.2
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 4.2e-188 661.8 490 70.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 5.5e-188 661.4 486 71.0
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 9.3e-188 660.6 498 68.9
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.7e-187 659.1 479 69.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.0e-186 657.1 481 70.7
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 6.7e-186 654.4 484 69.6
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.5e-185 653.3 476 71.0
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 6.2e-184 647.9 498 67.5
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 8.1e-184 647.5 480 69.2
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.4e-183 646.7 482 68.9
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.8e-183 646.4 485 69.9
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 3.1e-183 645.6 480 69.2
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.3e-183 644.8 483 69.6
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 6.9e-183 644.4 475 70.1
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.3e-181 640.2 476 69.7
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.1e-179 632.9 520 65.4
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 2.3e-178 629.4 472 68.9
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 9.6e-177 624.0 473 68.5
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.6e-176 623.2 484 66.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.8e-176 621.7 483 66.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 6.3e-176 621.3 451 70.3
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.8e-175 619.8 477 66.5
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 5.3e-175 618.2 465 67.5
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.2e-174 617.1 482 67.2
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.2e-174 617.1 482 67.2
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 1.2e-174 617.1 486 67.1
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.0e-174 616.3 483 68.1
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 2.6e-174 615.9 479 66.2
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.5e-174 615.1 479 66.6
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 5.9e-174 614.8 485 66.4
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.3e-173 613.6 480 66.2
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 2.2e-173 612.8 480 66.5
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.8e-173 612.1 479 66.4
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 8.4e-173 610.9 500 62.6
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 4.2e-172 608.6 485 65.4
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 5.5e-172 608.2 468 67.3
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.7e-171 605.9 468 68.6
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 4.3e-169 598.6 472 66.3
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 3.7e-168 595.5 484 64.3
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 2.4e-167 592.8 529 60.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.4e-167 592.8 479 64.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.0e-166 589.7 491 63.1
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.6e-166 589.3 480 64.4
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 4.5e-166 588.6 491 64.6
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 2.2e-165 586.3 496 62.5
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 3.8e-165 585.5 478 64.2
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 3.7e-160 568.9 469 63.3
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 4.8e-160 568.5 479 64.5
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 6.9e-159 564.7 497 60.4
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.4e-158 562.4 483 62.9
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.4e-154 550.4 481 59.9
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 6.7e-154 548.1 474 61.8
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.3e-152 543.9 479 59.9
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.6e-150 536.2 484 57.9
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.9e-149 532.7 495 59.0
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 8.5e-149 531.2 557 53.1
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.2e-147 527.3 404 67.3
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 8.0e-147 524.6 465 60.2
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.0e-146 524.2 521 56.8
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 2.0e-145 520.0 372 71.5
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.3e-144 517.3 476 59.5
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 6.3e-144 515.0 493 59.2
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 8.2e-144 514.6 408 65.9
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.3e-141 507.3 480 60.4
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 5.0e-141 505.4 346 74.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 7.2e-140 501.5 400 66.0
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 2.1e-139 500.0 383 69.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 4.0e-138 495.7 481 55.3
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 5.2e-138 495.4 519 53.0
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 5.7e-137 491.9 385 66.2
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 4.8e-136 488.8 266 84.6
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.0e-134 483.4 409 62.8
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.9e-133 479.6 454 59.5
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 6.5e-133 478.4 480 56.0
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 7.5e-129 464.9 544 48.9
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 3.7e-128 462.6 478 52.3
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.7e-126 454.9 457 55.6
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 9.5e-124 448.0 268 78.7
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 3.6e-123 446.0 851 36.7
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.0e-122 442.6 500 54.2
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.9e-120 435.6 520 48.5
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 4.4e-113 412.5 469 51.0
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.2e-105 387.9 475 49.5
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-94 349.7 596 39.1
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 5.6e-92 342.4 226 70.4
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.2e-91 339.0 430 50.2
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 3.1e-82 310.1 344 52.9
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.3e-77 294.7 193 71.5
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.1e-76 291.6 479 38.4
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 4.5e-73 279.6 265 51.3
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.9e-64 250.4 133 90.2
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 6.5e-64 249.2 281 44.8
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 2.1e-62 244.2 132 87.9
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.5e-57 228.0 389 43.2
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.1e-55 221.9 298 41.6
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 8.7e-53 212.2 288 40.6
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 8.2e-51 205.7 113 84.1
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 9.1e-42 175.6 106 78.3
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.1e-34 150.6 86 82.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.9e-24 117.5 76 73.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 5.5e-23 113.2 60 83.3
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.0e-20 104.8 81 64.2
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 1.9e-15 88.2 69 58.0
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.0e-13 82.4 52 78.8
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 5.2e-13 80.1 41 85.4
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.5e-12 78.6 68 61.8
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 1.7e-11 75.1 122 40.2
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.4e-10 72.0 48 72.9
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 5.4e-10 70.1 94 44.7
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 5.9e-09 66.6 72 51.4
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 7.8e-09 66.2 44 72.7


User provided reference genes

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