Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 8.3e-188 660.2 332 100.0
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.6e-183 646.0 332 98.5
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.5e-160 569.7 336 87.2
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 1.9e-155 552.7 336 83.9
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 7.6e-149 530.8 335 81.8
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 8.6e-145 517.3 313 82.4
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 3.6e-143 511.9 331 80.4
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 4.0e-142 508.4 328 78.7
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 2.0e-141 506.1 314 82.2
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.6e-138 496.5 305 82.0
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 2.3e-137 492.7 310 78.7
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 8.7e-137 490.7 308 80.2
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.7e-137 490.7 310 78.4
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.1e-136 490.3 311 78.8
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.5e-136 490.0 306 80.1
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.5e-136 489.2 313 77.3
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 3.3e-136 488.8 379 70.2
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.6e-136 488.0 309 79.0
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.6e-135 486.5 305 80.0
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 4.8e-135 485.0 338 72.8
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 1.4e-134 483.4 309 78.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.8e-134 483.0 304 79.9
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 6.9e-134 481.1 310 77.4
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 6.9e-134 481.1 310 75.8
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.2e-133 480.3 309 76.4
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.5e-133 479.9 330 73.0
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.4e-133 478.8 332 73.8
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 4.5e-133 478.4 342 70.5
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 4.5e-133 478.4 326 73.9
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 5.8e-133 478.0 341 72.1
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 5.8e-133 478.0 315 75.2
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.8e-133 478.0 309 75.4
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 7.6e-133 477.6 355 70.4
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 7.6e-133 477.6 305 78.0
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.3e-132 476.9 309 76.7
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.2e-132 476.1 337 72.1
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 6.4e-132 474.6 328 73.8
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 6.4e-132 474.6 306 75.2
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 8.4e-132 474.2 306 75.8
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.1e-131 473.8 306 75.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.4e-131 473.4 309 76.1
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.4e-131 473.4 308 74.0
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 3.2e-131 472.2 308 73.7
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 4.2e-131 471.9 306 75.2
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 5.4e-131 471.5 310 76.8
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 5.4e-131 471.5 310 74.8
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 9.3e-131 470.7 336 71.4
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 9.3e-131 470.7 309 75.1
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 2.1e-130 469.5 302 76.8
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 3.5e-130 468.8 308 75.3
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 6.0e-130 468.0 308 75.3
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.0e-129 467.2 318 73.9
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.0e-129 467.2 343 70.6
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.8e-129 466.5 315 74.0
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 2.3e-129 466.1 310 75.8
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 5.1e-129 464.9 314 73.6
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 6.7e-129 464.5 306 75.5
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 8.7e-129 464.2 311 72.7
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.1e-128 463.8 310 74.8
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.9e-128 463.0 310 74.5
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 3.3e-128 462.2 341 69.5
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.3e-128 462.2 304 77.0
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.3e-128 461.8 337 68.8
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 5.6e-128 461.5 335 69.9
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.3e-127 460.3 314 72.3
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 1.3e-127 460.3 293 76.1
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.6e-127 459.9 333 70.3
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 3.7e-127 458.8 335 71.0
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 6.2e-127 458.0 320 71.9
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 6.2e-127 458.0 307 73.0
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.4e-126 456.8 372 65.9
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.4e-126 456.8 372 65.9
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.4e-126 456.8 281 83.6
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.8e-126 456.4 297 76.8
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 4.0e-126 455.3 344 68.9
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 5.3e-126 454.9 314 74.5
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 7.6e-125 451.1 357 66.1
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.9e-124 449.1 308 71.8
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 4.9e-124 448.4 310 71.6
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.0e-121 440.7 305 70.8
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 3.0e-121 439.1 330 68.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 9.6e-120 434.1 275 81.8
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 3.4e-117 425.6 325 69.2
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 2.9e-116 422.5 338 66.0
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.9e-116 422.5 275 76.7
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 5.5e-115 418.3 269 76.6
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 6.9e-110 401.4 278 71.6
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.9e-107 393.3 328 61.6
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.3e-105 386.3 282 69.5
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.7e-103 380.2 268 73.5
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 2.2e-103 379.8 272 71.7
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 2.0e-101 373.2 333 59.5
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 2.6e-101 372.9 303 62.4
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 7.7e-101 371.3 277 68.2
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 4.7e-98 362.1 241 73.9
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 3.4e-93 345.9 271 67.5
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 2.2e-92 343.2 279 65.6
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.9e-92 342.8 200 82.5
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.6e-90 337.0 328 54.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 2.3e-89 333.2 205 78.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.3e-89 333.2 220 76.4
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 4.5e-85 318.9 265 63.4
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 3.2e-83 312.8 232 66.4
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.7e-82 308.9 307 56.4
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 5.2e-81 305.4 343 49.0
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 7.5e-80 301.6 203 73.4
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.8e-78 297.0 312 54.2
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.0e-72 276.9 195 72.8
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 6.1e-66 255.4 222 60.4
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 5.4e-62 242.3 148 77.0
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 5.6e-59 232.3 132 84.8
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 9.5e-59 231.5 247 53.4
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.2e-58 231.1 293 47.8
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 2.3e-52 210.3 119 84.9
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 3.6e-50 203.0 319 38.9
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 3.7e-47 193.0 171 57.9
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 4.9e-47 192.6 130 75.4
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 4.9e-47 192.6 130 75.4
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.4e-46 189.1 120 76.7
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 5.0e-44 182.6 126 73.0
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 5.6e-43 179.1 124 69.4
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.1e-42 177.2 198 52.0
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 9.9e-40 168.3 162 59.3
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 9.9e-40 168.3 145 60.0
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 8.3e-39 165.2 137 62.8
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 2.4e-38 163.7 153 63.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.0e-36 158.3 119 72.3
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 1.5e-35 154.5 89 83.1
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 4.5e-16 89.7 94 52.1
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 4.5e-16 89.7 65 69.2
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.9e-14 84.3 58 69.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.4e-14 84.0 61 65.6
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.2e-13 81.6 55 69.1
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 2.1e-13 80.9 110 42.7
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 1.3e-12 78.2 61 67.2
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 2.8e-10 70.5 81 48.1
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 6.2e-10 69.3 38 81.6
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 1.1e-09 68.6 141 34.8
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 2.6e-08 63.9 77 51.9
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 7.6e-08 62.4 44 70.5
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 1.7e-07 61.2 59 59.3
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 2.2e-07 60.8 126 34.1
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 4.2e-06 56.6 46 52.2


User provided reference genes

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