Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G241000 Glycine max HOM05D001548 ORTHO05D003901 1.3e-28 129.0 64 100.0
Phvul.011G215000 Phaseolus vulgaris HOM05D001548 ORTHO05D003901 6.2e-15 83.6 51 86.3
VMungo1127G0758 Vigna mungo HOM05D001548 ORTHO05D003901 6.2e-15 83.6 51 86.3
Oeu021698.2 Olea europaea HOM05D001548 ORTHO05D003901 1.7e-12 75.5 51 76.5
Sed0024517 Sechium edule HOM05D001548 ORTHO05D003901 4.9e-12 73.9 51 74.5
THA.LOC104801582 Tarenaya hassleriana HOM05D001548 ORTHO05D003901 1.9e-11 72.0 51 72.5
Cc02_g04500 Coffea canephora HOM05D001548 ORTHO05D003901 2.4e-11 71.6 51 68.6
Dinv06579 Davidia involucrata HOM05D002664 ORTHO05D002974 2.4e-11 71.6 51 72.5
Potri.001G140600 Populus trichocarpa HOM05D001548 ORTHO05D003901 3.2e-11 71.2 51 72.5
AUR62002230 Chenopodium quinoa HOM05D001548 ORTHO05D003901 4.1e-11 70.9 51 70.6
AUR62015441 Chenopodium quinoa HOM05D001548 ORTHO05D003901 4.1e-11 70.9 51 70.6
Haze_21275 Corylus avellana HOM05D001548 ORTHO05D003901 4.1e-11 70.9 51 72.5
Nitab4.5_0000262g0070 Nicotiana tabacum HOM05D001548 ORTHO05D003901 4.1e-11 70.9 51 68.6
Sc19g0001740 Simmondsia chinensis HOM05D001548 ORTHO05D003901 4.1e-11 70.9 51 72.5
Cpa.g.sc13.275 Carica papaya HOM05D001548 ORTHO05D003901 5.4e-11 70.5 51 70.6
COL.COLO4_14077 Corchorus olitorius HOM05D001548 ORTHO05D003901 5.4e-11 70.5 51 70.6
Lj3g0000692 Lotus japonicus HOM05D001548 ORTHO05D003901 5.4e-11 70.5 51 74.5
AT5G61510 Arabidopsis thaliana HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 68.6
arahy.Tifrunner.gnm1.ann1.5G5TDX Arachis hypogaea HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 70.6
arahy.Tifrunner.gnm1.ann1.YE8881 Arachis hypogaea HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 70.6
arahy.Tifrunner.gnm1.ann1.ZGP79Y Arachis hypogaea HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 72.5
Gohir.A07G042600 Gossypium hirsutum HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 70.6
Gorai.001G050000 Gossypium raimondii HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 70.6
Gorai.001G050100 Gossypium raimondii HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 70.6
Solyc06g034120.4 Solanum lycopersicum HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 68.6
Sopen06g010780 Solanum pennellii HOM05D001548 ORTHO05D003901 7.0e-11 70.1 51 68.6
FAN03G0079 Fragaria x ananassa HOM05D001548 ORTHO05D003901 9.2e-11 69.7 51 70.6
FAN10G1932 Fragaria x ananassa HOM05D001548 ORTHO05D003901 9.2e-11 69.7 51 70.6
Glyma.12G241100 Glycine max HOM05D001548 ORTHO05D003901 9.2e-11 69.7 51 74.5
Lalb_Chr01g0008161 Lupinus albus HOM05D001548 ORTHO05D003901 9.2e-11 69.7 51 72.5
Nn1g00917 Nelumbo nucifera HOM05D001548 ORTHO05D003901 9.2e-11 69.7 51 72.5
Nitab4.5_0017191g0010 Nicotiana tabacum HOM05D001548 ORTHO05D003901 9.2e-11 69.7 51 66.7
Phvul.011G215100 Phaseolus vulgaris HOM05D001548 ORTHO05D003901 9.2e-11 69.7 51 74.5
VMungo1127G0820 Vigna mungo HOM05D000045 ORTHO05D003901 9.2e-11 69.7 51 74.5
Cfa012920 Carpinus fangiana HOM05D001548 ORTHO05D003901 1.2e-10 69.3 51 70.6
ClCG01G004540 Citrullus lanatus HOM05D001548 ORTHO05D003901 1.2e-10 69.3 51 70.6
Ciclev10005123m.g Citrus clementina HOM05D001548 ORTHO05D003901 1.2e-10 69.3 51 72.5
Eucgr.A02910 Eucalyptus grandis HOM05D001548 ORTHO05D003901 1.2e-10 69.3 51 70.6
PSO675G0881 Papaver somniferum HOM05D001548 ORTHO05D003901 1.2e-10 69.3 51 72.5
PSO732G0088 Papaver somniferum HOM05D001548 ORTHO05D003901 1.2e-10 69.3 51 72.5
EL10Ac3g05866 Beta vulgaris HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 68.6
CSS0028646 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 66.7
CSS0030680 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 66.7
Cfa006297 Carpinus fangiana HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 70.6
CiPaw.07G056100 Carya illinoinensis HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 70.6
CsaV3_5G004760 Cucumis sativus L. HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 70.6
Gohir.A07G042700 Gossypium hirsutum HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 68.6
HanXRQChr05g0142611 Helianthus annuus HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 68.6
Lalb_Chr19g0131941 Lupinus albus HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 74.5
Sabra01G0109400 Salix brachista HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 70.6
PGSC0003DMG400021595 Solanum tuberosum HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 68.6
Thecc.03G151500 Theobroma cacao HOM05D001548 ORTHO05D003901 1.6e-10 68.9 51 68.6
BcaNung01433 Brassica carinata HOM05D001548 ORTHO05D003901 2.0e-10 68.6 51 70.6
Medtr4g029500 Medicago truncatula HOM05D001548 ORTHO05D003901 2.0e-10 68.6 51 74.5
RcHm_v2.0_Chr1g0363511 Rosa chinensis HOM05D001548 ORTHO05D003901 2.0e-10 68.6 53 66.0
Sed0016189 Sechium edule HOM05D001548 ORTHO05D003901 2.0e-10 68.6 51 70.6
Hund04580 Selenicereus undatus HOM05D001548 ORTHO05D003901 2.0e-10 68.6 51 68.6
MELO3C005482.2 Cucumis melo HOM05D001548 ORTHO05D003901 2.7e-10 68.2 51 70.6
FvH4_7g27140 Fragaria vesca HOM05D001548 ORTHO05D003901 2.7e-10 68.2 51 68.6
FAN01G0887 Fragaria x ananassa HOM05D001548 ORTHO05D003901 2.7e-10 68.2 51 68.6
FAN06G0102 Fragaria x ananassa HOM05D001548 ORTHO05D003901 2.7e-10 68.2 51 68.6
FAN06G2630 Fragaria x ananassa HOM05D001548 ORTHO05D003901 2.7e-10 68.2 51 68.6
Gohir.D07G047000 Gossypium hirsutum HOM05D001548 ORTHO05D003901 2.7e-10 68.2 51 68.6
Peaxi162Scf00304g01121 Petunia axillaris HOM05D001548 ORTHO05D003901 2.7e-10 68.2 51 66.7
QL02p025629 Quercus lobata HOM05D001548 ORTHO05D003901 2.7e-10 68.2 62 58.1
Ah.13g066540 Amaranthus hybridus HOM05D001548 ORTHO05D003901 3.5e-10 67.8 51 68.6
CAN.G330.2 Capsicum annuum HOM05D001548 ORTHO05D003901 3.5e-10 67.8 51 66.7
CDE11G0092 Ceratophyllum demersum HOM05D001548 ORTHO05D003901 3.5e-10 67.8 51 66.7
Eucgr.A02907 Eucalyptus grandis HOM05D001548 ORTHO05D003901 3.5e-10 67.8 51 70.6
Hma1.2p1_1132F.1_g260120 Hydrangea macrophylla HOM05D001548 ORTHO05D003901 3.5e-10 67.8 51 66.7
Psat7g229120 Pisum sativum HOM05D001548 ORTHO05D003901 3.5e-10 67.8 52 69.2
RcHm_v2.0_Chr1g0373941 Rosa chinensis HOM05D001548 ORTHO05D003901 3.5e-10 67.8 51 70.6
BcaC04g23446 Brassica carinata HOM05D001548 ORTHO05D003901 4.6e-10 67.4 51 68.6
A09p07310 Brassica napus HOM05D001548 ORTHO05D003901 4.6e-10 67.4 51 68.6
C09p08250 Brassica napus HOM05D001548 ORTHO05D003901 4.6e-10 67.4 51 68.6
BraA09t36386Z Brassica rapa HOM05D001548 ORTHO05D003901 4.6e-10 67.4 51 68.6
AL8G38200 Arabidopsis lyrata HOM05D001548 ORTHO05D003901 6.0e-10 67.0 51 66.7
Carub.0008s2220 Capsella rubella HOM05D001548 ORTHO05D003901 6.0e-10 67.0 51 66.7
DCAR_009451 Daucus carota HOM05D001548 ORTHO05D003901 6.0e-10 67.0 51 66.7
Thhalv10004575m.g Eutrema salsugineum HOM05D001548 ORTHO05D003901 6.0e-10 67.0 51 68.6
MD07G1251000 Malus domestica HOM05D001548 ORTHO05D003901 6.0e-10 67.0 51 68.6
Sp2g24710 Schrenkiella parvula HOM05D001548 ORTHO05D003901 6.0e-10 67.0 51 68.6
Cc02_g04510 Coffea canephora HOM05D001548 ORTHO05D003901 7.8e-10 66.6 51 66.7
TAR374G1088 Trochodendron aralioides HOM05D001548 ORTHO05D003901 7.8e-10 66.6 51 68.6
Aa31LG11G1900 Aethionema arabicum HOM05D001548 ORTHO05D003901 1.0e-09 66.2 51 68.6
Nn6g33874 Nelumbo nucifera HOM05D001548 ORTHO05D003901 1.0e-09 66.2 51 70.6
Prupe.2G274500 Prunus persica HOM05D001548 ORTHO05D003901 1.0e-09 66.2 51 68.6
CiPaw.07G237100 Carya illinoinensis HOM05D001548 ORTHO05D003901 1.3e-09 65.9 51 66.7
MD01G1180600 Malus domestica HOM05D001548 ORTHO05D003901 1.3e-09 65.9 51 66.7
TWI23G1258 Tripterygium wilfordii HOM05D001548 ORTHO05D003901 1.3e-09 65.9 51 66.7
Actinidia13594 Actinidia chinensis HOM05D001548 ORTHO05D003901 1.7e-09 65.5 51 68.6
Eucgr.A02908 Eucalyptus grandis HOM05D001548 ORTHO05D003901 1.7e-09 65.5 51 66.7
Sabra01G0178700 Salix brachista HOM05D001548 ORTHO05D003901 1.7e-09 65.5 51 68.6
SGA_v2.0_scaffold2G01230 Striga asiatica HOM05D002664 ORTHO05D003901 1.7e-09 65.5 51 64.7
TAR375G0989 Trochodendron aralioides HOM05D001548 ORTHO05D003901 1.7e-09 65.5 51 64.7
unitig_37.g12491 Utricularia gibba HOM05D001548 ORTHO05D003901 1.7e-09 65.5 51 66.7
vmacro06969 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 1.7e-09 65.5 51 66.7
BolC9t53735H Brassica oleracea HOM05D001548 ORTHO05D003901 2.3e-09 65.1 51 66.7
Ca_26000_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003901 2.3e-09 65.1 51 66.7
Lj6g0025655 Lotus japonicus HOM05D001548 ORTHO05D003901 2.3e-09 65.1 51 70.6
PGR042G0437 Punica granatum HOM05D001548 ORTHO05D003901 2.3e-09 65.1 51 70.6
TPR.G5004 Trifolium pratense HOM05D001548 ORTHO05D003901 2.3e-09 65.1 51 68.6
TAR059G0002 Trochodendron aralioides HOM05D001548 ORTHO05D003901 2.3e-09 65.1 51 64.7
Duzib205G1029 Durio zibethinus HOM05D001548 ORTHO05D003901 3.0e-09 64.7 51 64.7
QL02p025510 Quercus lobata HOM05D001548 ORTHO05D003901 3.0e-09 64.7 51 62.7
SalBow3G1454 Salvia bowleyana HOM05D001548 ORTHO05D003901 3.0e-09 64.7 51 66.7
SalBow3G1776 Salvia bowleyana HOM05D001548 ORTHO05D003901 3.0e-09 64.7 51 66.7
Hund04581 Selenicereus undatus HOM05D001548 ORTHO05D003901 3.0e-09 64.7 51 66.7
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 3.0e-09 64.7 52 65.4
Zm00001eb000320 Zea mays HOM05D001548 ORTHO05D003901 3.9e-09 64.3 51 62.7
vmacro06822 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 5.0e-09 63.9 51 64.7
MSTRG.27209 Avicennia marina HOM05D001548 ORTHO05D003901 6.6e-09 63.5 51 60.8
TWI14G0157 Tripterygium wilfordii HOM05D001548 ORTHO05D003901 6.6e-09 63.5 51 68.6
CARHR275280 Cardamine hirsuta HOM05D001548 ORTHO05D003901 8.6e-09 63.2 51 62.7
COL.COLO4_14078 Corchorus olitorius HOM05D001548 ORTHO05D003901 8.6e-09 63.2 51 64.7
Rhsim03G0164300 Rhododendron simsii HOM05D001548 ORTHO05D003901 8.6e-09 63.2 51 62.7
GSVIVG01017501001 Vitis vinifera HOM05D001548 ORTHO05D003901 8.6e-09 63.2 51 64.7
Prupe.2G274600 Prunus persica HOM05D001548 ORTHO05D003901 1.1e-08 62.8 51 66.7
RcHm_v2.0_Chr1g0373931 Rosa chinensis HOM05D001548 ORTHO05D003901 1.1e-08 62.8 51 64.7
TAR374G0526 Trochodendron aralioides HOM05D001548 ORTHO05D003901 1.1e-08 62.8 51 66.7
TAR374G1123 Trochodendron aralioides HOM05D001548 ORTHO05D003901 1.1e-08 62.8 51 66.7
MD07G1250800 Malus domestica HOM05D001548 ORTHO05D003901 1.5e-08 62.4 51 64.7
Manes.14G037900 Manihot esculenta HOM05D001548 ORTHO05D003901 1.9e-08 62.0 51 66.7
Oeu028188.3 Olea europaea HOM05D001548 ORTHO05D003901 1.9e-08 62.0 51 64.7
ECA238G3464 Erigeron canadensis HOM05D001548 ORTHO05D003901 2.5e-08 61.6 51 60.8
FvH4_7g27132 Fragaria vesca HOM05D001548 ORTHO05D003901 2.5e-08 61.6 51 64.7
Prupe.2G133300 Prunus persica HOM05D001548 ORTHO05D003901 2.5e-08 61.6 51 64.7
Os03g0101600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003901 3.3e-08 61.2 48 64.6
Os10g0561100 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003901 3.3e-08 61.2 51 58.8
Potri.004G233800 Populus trichocarpa HOM05D001548 ORTHO05D003901 4.3e-08 60.8 51 64.7
HanXRQChr09g0245671 Helianthus annuus HOM05D001548 ORTHO05D003901 5.6e-08 60.5 50 60.0
Lj1C977T5 Lonicera japonica HOM05D001548 ORTHO05D003901 7.3e-08 60.1 52 65.4
HPP92_014496 Vanilla planifolia HOM05D001548 ORTHO05D003901 7.3e-08 60.1 48 62.5
Migut.F00504 Erythranthe guttata HOM05D001548 ORTHO05D003901 9.5e-08 59.7 51 60.8
Rhsim03G0164200 Rhododendron simsii HOM05D001548 ORTHO05D003901 9.5e-08 59.7 51 58.8
SEGI_07541 Sequoiadendron giganteum HOM05D001548 ORTHO05D003901 9.5e-08 59.7 51 62.7
Dinv16853 Davidia involucrata HOM05D001548 ORTHO05D003901 1.2e-07 59.3 51 62.7
Lsat_1_v5_gn_2_128480 Lactuca sativa HOM05D001548 ORTHO05D003901 1.2e-07 59.3 50 58.0
Lj8C45T15 Lonicera japonica HOM05D001548 ORTHO05D003901 1.2e-07 59.3 51 60.8
Aqoxy7G00517 Aquilegia oxysepala HOM05D001548 ORTHO05D003901 1.6e-07 58.9 51 62.7
Lsat_1_v5_gn_8_10020 Lactuca sativa HOM05D001548 ORTHO05D003901 2.1e-07 58.5 48 64.6
ATR0057G022 Amborella trichopoda HOM05D001548 ORTHO05D003901 4.7e-07 57.4 51 60.8
vmacro06824 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 4.7e-07 57.4 51 56.9
TAR375G1041 Trochodendron aralioides HOM05D001548 ORTHO05D003901 6.2e-07 57.0 51 60.8
MSTRG.27210 Avicennia marina HOM05D001548 ORTHO05D003901 1.4e-06 55.8 51 58.8
MD01G1178400 Malus domestica HOM05D001548 ORTHO05D003901 1.4e-06 55.8 51 58.8
MD01G1179500 Malus domestica HOM05D001548 ORTHO05D003901 1.8e-06 55.5 51 58.8
TWI79G0274 Tripterygium wilfordii HOM05D001548 ORTHO05D003901 1.8e-06 55.5 49 57.1
SMO169G0311 Selaginella moellendorffii HOM05D001548 ORTHO05D003901 4.0e-06 54.3 51 56.9
SMO202G0047 Selaginella moellendorffii HOM05D001548 ORTHO05D003901 4.0e-06 54.3 51 56.9
vmacro06823 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 6.8e-06 53.5 51 52.9


User provided reference genes

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