Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G240501 Glycine max HOM05D002878 ORTHO05D003649 1.3e-94 349.7 178 100.0
Glyma.09G000600 Glycine max HOM05D002878 ORTHO05D003649 2.5e-50 202.6 146 76.0
Phvul.011G214600 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 4.5e-47 191.8 148 75.7
VMungo1127G0209 Vigna mungo HOM05D002878 ORTHO05D003649 1.9e-45 186.4 148 74.3
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 2.9e-38 162.5 139 66.9
Medtr4g022850 Medicago truncatula HOM05D002878 ORTHO05D003649 2.7e-36 156.0 146 61.0
CSS0041624 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 6.0e-36 154.8 122 68.0
QL04p003128 Quercus lobata HOM05D002878 ORTHO05D003649 1.8e-35 153.3 122 64.8
QL04p000093 Quercus lobata HOM05D002878 ORTHO05D003649 3.9e-35 152.1 122 64.8
GSVIVG01001372001 Vitis vinifera HOM05D002878 ORTHO05D003649 3.9e-35 152.1 92 83.7
Manes.10G150700 Manihot esculenta HOM05D002878 ORTHO05D003649 8.7e-35 151.0 130 63.8
TAR633G2681 Trochodendron aralioides HOM05D002878 ORTHO05D003649 4.3e-34 148.7 93 79.6
vmacro13619 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 4.3e-34 148.7 112 71.4
Potri.001G229100 Populus trichocarpa HOM05D002878 ORTHO05D003649 1.3e-33 147.1 94 76.6
Sabra16G0136700 Salix brachista HOM05D002878 ORTHO05D003649 1.6e-33 146.7 94 76.6
Lalb_Chr01g0008141 Lupinus albus HOM05D002878 ORTHO05D003649 3.7e-33 145.6 91 83.5
Rhsim07G0050700 Rhododendron simsii HOM05D001227 ORTHO05D001082 6.3e-33 144.8 110 70.0
Actinidia31701 Actinidia chinensis HOM05D002878 ORTHO05D003649 2.4e-32 142.9 89 79.8
Dinv43928 Davidia involucrata HOM05D002878 ORTHO05D003649 2.4e-32 142.9 97 77.3
DCAR_015695 Daucus carota HOM05D002878 ORTHO05D003649 4.1e-32 142.1 93 78.5
Atru.chr11.2692 Acer truncatum HOM05D002878 ORTHO05D003649 2.0e-31 139.8 93 75.3
Prupe.2G004500 Prunus persica HOM05D002878 ORTHO05D003649 3.4e-31 139.0 115 65.2
HanXRQChr04g0117341 Helianthus annuus HOM05D002878 ORTHO05D003649 7.6e-31 137.9 92 75.0
PSO384G3105 Papaver somniferum HOM05D002878 ORTHO05D003649 1.3e-30 137.1 123 61.8
MD07G1003000 Malus domestica HOM05D002878 ORTHO05D003649 2.2e-30 136.3 122 61.5
MD02G1318300 Malus domestica HOM05D002878 ORTHO05D003649 3.8e-30 135.6 140 57.1
QL07p005912 Quercus lobata HOM05D002878 ORTHO05D003649 3.8e-30 135.6 91 71.4
ECA236G1248 Erigeron canadensis HOM05D002878 ORTHO05D003649 2.5e-29 132.9 93 73.1
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 4.2e-29 132.1 108 63.0
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 5.5e-29 131.7 130 54.6
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 1.2e-28 130.6 125 56.0
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 1.6e-28 130.2 96 68.8
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 1.6e-28 130.2 137 50.4
MBI01_g33890_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 1.6e-28 130.2 93 69.9
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 2.7e-28 129.4 104 63.5
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 3.6e-28 129.0 132 54.5
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 4.6e-28 128.6 90 70.0
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 4.6e-28 128.6 132 54.5
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 6.1e-28 128.3 116 58.6
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 6.1e-28 128.3 98 66.3
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 6.1e-28 128.3 90 70.0
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 6.1e-28 128.3 137 52.6
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 7.9e-28 127.9 121 59.5
Cc07_g06010 Coffea canephora HOM05D002878 ORTHO05D003649 1.0e-27 127.5 120 54.2
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 1.0e-27 127.5 134 54.5
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 1.0e-27 127.5 90 70.0
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 1.0e-27 127.5 90 71.1
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 1.3e-27 127.1 90 70.0
Cpa.g.sc55.146 Carica papaya HOM05D002878 ORTHO05D003649 1.8e-27 126.7 121 57.0
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 1.8e-27 126.7 95 66.3
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 1.8e-27 126.7 130 53.8
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 2.3e-27 126.3 92 68.5
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 2.3e-27 126.3 91 69.2
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 2.3e-27 126.3 89 71.9
ATR0605G380 Amborella trichopoda HOM05D002878 ORTHO05D003649 3.0e-27 125.9 121 55.4
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 3.0e-27 125.9 91 69.2
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 3.0e-27 125.9 93 66.7
Ciclev10027323m.g Citrus clementina HOM05D002878 ORTHO05D003649 3.0e-27 125.9 97 66.0
FAN26G1304 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.0e-27 125.9 109 61.5
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 3.0e-27 125.9 95 66.3
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 3.0e-27 125.9 89 70.8
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 3.0e-27 125.9 93 66.7
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 3.0e-27 125.9 107 60.7
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 3.0e-27 125.9 92 67.4
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 3.9e-27 125.6 97 68.0
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 3.9e-27 125.6 97 68.0
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 3.9e-27 125.6 97 68.0
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 3.9e-27 125.6 126 54.8
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 3.9e-27 125.6 100 67.0
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 3.9e-27 125.6 106 60.4
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 5.1e-27 125.2 91 69.2
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 5.1e-27 125.2 90 67.8
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 5.1e-27 125.2 95 67.4
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 5.1e-27 125.2 119 57.1
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 5.1e-27 125.2 106 62.3
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 5.1e-27 125.2 125 56.0
SGA_v2.0_scaffold260G45879 Striga asiatica HOM05D002878 ORTHO05D003649 5.1e-27 125.2 96 66.7
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 6.7e-27 124.8 91 68.1
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 6.7e-27 124.8 91 68.1
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 6.7e-27 124.8 91 68.1
Migut.B01365 Erythranthe guttata HOM05D002878 ORTHO05D003649 6.7e-27 124.8 88 69.3
Migut.K00348 Erythranthe guttata HOM05D002878 ORTHO05D003649 6.7e-27 124.8 91 67.0
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 6.7e-27 124.8 114 57.9
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 6.7e-27 124.8 114 57.9
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 6.7e-27 124.8 90 67.8
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 6.7e-27 124.8 89 68.5
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 8.8e-27 124.4 90 66.7
Dinv39845 Davidia involucrata HOM05D002878 ORTHO05D003649 8.8e-27 124.4 89 68.5
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 8.8e-27 124.4 89 68.5
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 8.8e-27 124.4 92 68.5
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 8.8e-27 124.4 90 66.7
TAR628G0235 Trochodendron aralioides HOM05D002878 ORTHO05D003649 8.8e-27 124.4 88 70.5
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 1.1e-26 124.0 116 56.9
Lsat_1_v5_gn_9_111181 Lactuca sativa HOM05D002878 ORTHO05D003649 1.1e-26 124.0 93 65.6
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 1.1e-26 124.0 88 69.3
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 1.1e-26 124.0 91 69.2
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 1.1e-26 124.0 93 66.7
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 1.5e-26 123.6 89 69.7
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 1.5e-26 123.6 106 62.3
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 1.5e-26 123.6 89 69.7
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.5e-26 123.6 89 69.7
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 1.5e-26 123.6 90 67.8
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 1.5e-26 123.6 88 67.0
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 1.9e-26 123.2 114 56.1
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 1.9e-26 123.2 109 57.8
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 1.9e-26 123.2 88 69.3
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 1.9e-26 123.2 89 67.4
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 1.9e-26 123.2 91 69.2
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 1.9e-26 123.2 93 65.6
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 1.9e-26 123.2 92 68.5
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 1.9e-26 123.2 97 61.9
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.5e-26 122.9 91 65.9
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 2.5e-26 122.9 91 68.1
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 2.5e-26 122.9 88 70.5
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 2.5e-26 122.9 89 69.7
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 2.5e-26 122.9 92 65.2
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 2.5e-26 122.9 89 69.7
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 2.5e-26 122.9 89 68.5
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 3.3e-26 122.5 87 70.1
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 3.3e-26 122.5 90 66.7
TAR376G0143 Trochodendron aralioides HOM05D002878 ORTHO05D003649 3.3e-26 122.5 87 70.1
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 3.3e-26 122.5 89 68.5
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 4.3e-26 122.1 91 65.9
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 4.3e-26 122.1 100 60.0
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 4.3e-26 122.1 89 66.3
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 4.3e-26 122.1 89 69.7
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 5.7e-26 121.7 89 68.5
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 5.7e-26 121.7 133 53.4
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 5.7e-26 121.7 90 65.6
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 5.7e-26 121.7 89 68.5
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 7.4e-26 121.3 131 50.4
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 7.4e-26 121.3 89 67.4
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 7.4e-26 121.3 90 65.6
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 9.7e-26 120.9 89 68.5
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 1.3e-25 120.6 85 70.6
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 1.3e-25 120.6 85 70.6
CBR_g2783 Chara braunii HOM05D002878 ORTHO05D003649 1.3e-25 120.6 96 63.5
Dinv05186 Davidia involucrata HOM05D002878 ORTHO05D003649 1.3e-25 120.6 86 69.8
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 1.3e-25 120.6 90 63.3
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 1.3e-25 120.6 88 68.2
Os04g0448950 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 1.3e-25 120.6 88 67.0
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 1.7e-25 120.2 114 55.3
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 1.7e-25 120.2 92 63.0
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 1.7e-25 120.2 88 64.8
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 3.7e-25 119.0 85 69.4
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 3.7e-25 119.0 85 69.4
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 3.7e-25 119.0 85 69.4
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 3.7e-25 119.0 86 68.6
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 3.7e-25 119.0 86 70.9
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 3.7e-25 119.0 95 62.1
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 6.3e-25 118.2 88 65.9
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 8.2e-25 117.9 88 64.8
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 1.4e-24 117.1 95 60.0
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 1.8e-24 116.7 88 63.6
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 2.4e-24 116.3 82 69.5
Dinv32074 Davidia involucrata HOM05D002878 ORTHO05D003649 2.4e-24 116.3 86 67.4
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 2.4e-24 116.3 88 65.9
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 2.4e-24 116.3 90 63.3
Zm00001eb081470 Zea mays HOM05D002878 ORTHO05D003649 3.1e-24 115.9 87 66.7
Dinv30763 Davidia involucrata HOM05D002878 ORTHO05D003649 6.9e-24 114.8 84 67.9
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 6.9e-24 114.8 83 69.9
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 5.9e-23 111.7 78 70.5
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 1.0e-22 110.9 78 70.5
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 3.8e-22 109.0 78 69.2
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 3.8e-22 109.0 78 69.2
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 3.8e-22 109.0 78 69.2
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 3.8e-22 109.0 78 69.2
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 3.8e-22 109.0 78 69.2
Cre02.g082550 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D003649 3.8e-22 109.0 105 49.5
Lj9A623T48 Lonicera japonica HOM05D002878 ORTHO05D003649 5.0e-22 108.6 133 47.4
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 1.1e-21 107.5 77 68.8
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 1.9e-21 106.7 77 68.8
Medtr4g134870 Medicago truncatula HOM05D002878 ORTHO05D003649 4.7e-20 102.1 87 58.6
Migut.B01363 Erythranthe guttata HOM05D002878 ORTHO05D003649 6.7e-19 98.2 86 54.7
CARHR126560 Cardamine hirsuta HOM05D002878 ORTHO05D003649 4.5e-15 85.5 70 61.4
Nn4g23554 Nelumbo nucifera HOM05D002878 ORTHO05D003649 5.9e-15 85.1 61 72.1
Zm00001eb302340 Zea mays HOM05D000113 ORTHO05D001108 2.7e-12 76.3 64 60.9
Glyma.01G186202 Glycine max HOM05D002878 ORTHO05D003649 2.2e-09 66.6 54 59.3
MCO16G227 Micromonas commoda HOM05D002878 ORTHO05D003649 2.2e-09 66.6 83 47.0
CARHR217720 Cardamine hirsuta HOM05D002878 ORTHO05D003649 4.8e-09 65.5 55 60.0
PRCOL_00004396 Prasinoderma coloniale HOM05D002878 ORTHO05D003649 1.2e-07 60.8 86 43.0
Zm00001eb383390 Zea mays HOM05D000113 ORTHO05D001108 5.9e-07 58.5 46 58.7
Prupe.2G004400 Prunus persica HOM05D002878 ORTHO05D003649 2.2e-06 56.6 38 73.7


User provided reference genes

Program Settings