Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 6.1e-70 267.3 130 100.0
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.1e-21 107.1 117 55.6
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.2e-20 103.6 50 96.0
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 2.2e-19 99.4 50 90.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.9e-18 96.3 50 88.0
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 7.1e-18 94.4 50 90.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.1e-17 92.8 52 90.4
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.1e-17 92.8 50 88.0
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.0e-16 90.5 52 88.5
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.9e-15 86.3 50 80.0
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.9e-15 86.3 50 82.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.3e-15 85.5 50 76.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 5.6e-15 84.7 50 76.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 7.3e-15 84.3 50 78.0
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 7.3e-15 84.3 50 76.0
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.6e-14 83.2 50 76.0
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.1e-14 82.8 51 72.5
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.1e-14 82.8 50 78.0
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 2.1e-14 82.8 50 76.0
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 2.1e-14 82.8 53 73.6
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.6e-14 82.0 50 78.0
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 6.2e-14 81.3 50 74.0
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 6.2e-14 81.3 50 76.0
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 6.2e-14 81.3 46 78.3
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 8.1e-14 80.9 50 76.0
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.1e-13 80.5 53 71.7
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.4e-13 80.1 50 72.0
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.8e-13 79.7 50 70.0
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.8e-13 79.7 50 72.0
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 2.4e-13 79.3 50 72.0
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.4e-13 79.3 50 76.0
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.4e-13 79.3 50 76.0
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 3.1e-13 79.0 50 70.0
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 4.0e-13 78.6 50 70.0
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 5.3e-13 78.2 50 70.0
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 5.3e-13 78.2 50 72.0
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 6.9e-13 77.8 50 72.0
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 6.9e-13 77.8 50 70.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 9.0e-13 77.4 50 68.0
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 9.0e-13 77.4 50 70.0
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.2e-12 77.0 52 73.1
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.5e-12 76.6 46 73.9
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.5e-12 76.6 46 73.9
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.5e-12 76.6 46 73.9
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.0e-12 76.3 50 66.0
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.0e-12 76.3 50 66.0
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.0e-12 76.3 44 75.0
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 2.6e-12 75.9 53 64.2
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.6e-12 75.9 50 70.0
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 3.4e-12 75.5 52 73.1
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 3.4e-12 75.5 50 66.0
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 3.4e-12 75.5 43 79.1
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 3.4e-12 75.5 43 79.1
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 4.4e-12 75.1 50 66.0
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 4.4e-12 75.1 51 70.6
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.4e-12 75.1 50 68.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 5.8e-12 74.7 50 68.0
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 5.8e-12 74.7 50 72.0
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 7.6e-12 74.3 50 68.0
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 9.9e-12 73.9 44 72.7
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 9.9e-12 73.9 50 66.0
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.7e-11 73.2 51 70.6
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.7e-11 73.2 50 68.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.2e-11 72.8 60 60.0
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.2e-11 72.8 50 66.0
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.9e-11 72.4 43 79.1
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 2.9e-11 72.4 55 63.6
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 4.9e-11 71.6 50 70.0
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 6.4e-11 71.2 50 66.0
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 8.4e-11 70.9 43 79.1
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 8.4e-11 70.9 51 68.6
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.1e-10 70.5 59 59.3
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.1e-10 70.5 50 64.0
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.1e-10 70.5 50 64.0
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.4e-10 70.1 50 64.0
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.4e-10 70.1 50 64.0
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.9e-10 69.7 51 64.7
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.9e-10 69.7 57 63.2
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 2.4e-10 69.3 51 70.6
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 5.4e-10 68.2 51 68.6
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 5.4e-10 68.2 46 71.7
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 7.1e-10 67.8 50 64.0
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 7.1e-10 67.8 47 66.0
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.2e-09 67.0 44 65.9
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.7e-09 65.9 48 60.4
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 3.5e-09 65.5 42 69.0
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.0e-08 63.9 48 64.6
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.0e-08 63.9 61 54.1
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.3e-08 63.5 63 50.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.3e-08 63.5 51 62.7
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.0e-08 62.4 40 72.5
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.0e-08 62.4 53 58.5
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 5.1e-08 61.6 40 65.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.5e-07 60.1 36 69.4
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 1.9e-07 59.7 65 47.7
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-07 59.7 45 53.3
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-07 59.7 45 53.3
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 3.3e-07 58.9 50 52.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 5.6e-07 58.2 39 61.5
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 7.3e-07 57.8 55 50.9
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 7.3e-07 57.8 28 92.9
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 4.8e-06 55.1 35 71.4
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 8.1e-06 54.3 36 66.7


User provided reference genes

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