Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 7.9e-62 240.4 128 100.0
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 2.9e-56 221.9 124 92.7
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.3e-52 208.0 127 87.4
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.3e-52 208.0 127 87.4
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 2.1e-51 205.7 128 85.9
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 2.8e-51 205.3 123 87.8
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 3.7e-51 204.9 125 85.6
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 4.8e-51 204.5 128 85.2
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.2e-51 204.1 128 85.9
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 3.1e-50 201.8 128 85.2
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 5.3e-50 201.1 128 83.6
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 1.5e-49 199.5 128 85.2
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.5e-49 199.5 123 85.4
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 2.0e-49 199.1 117 88.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 2.6e-49 198.7 128 83.6
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 3.4e-49 198.4 128 83.6
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 3.4e-49 198.4 123 84.6
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 3.4e-49 198.4 123 84.6
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 4.5e-49 198.0 128 82.0
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 7.6e-49 197.2 123 82.9
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.0e-48 196.8 128 82.8
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.0e-48 196.8 128 82.8
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 1.0e-48 196.8 128 82.8
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.2e-48 195.7 128 82.0
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 6.5e-48 194.1 128 82.0
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 3.2e-47 191.8 111 91.0
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.2e-47 191.4 128 81.2
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 9.3e-47 190.3 129 80.6
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 9.3e-47 190.3 128 80.5
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 1.6e-46 189.5 135 77.0
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.5e-46 188.3 128 80.5
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 4.6e-46 188.0 117 84.6
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-45 186.4 116 85.3
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-45 186.4 116 85.3
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-45 186.4 116 85.3
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.8e-45 186.0 114 86.8
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 8.7e-45 183.7 123 78.9
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 8.7e-45 183.7 128 79.7
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 1.9e-44 182.6 115 84.3
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 1.9e-44 182.6 123 80.5
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.5e-44 182.2 117 82.1
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 3.3e-44 181.8 128 78.1
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 4.3e-44 181.4 111 85.6
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.3e-43 179.9 115 82.6
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.6e-43 179.5 119 80.7
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 2.2e-43 179.1 117 81.2
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 2.2e-43 179.1 119 82.4
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 6.9e-42 174.1 145 69.7
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 2.2e-40 169.1 124 70.2
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.9e-40 168.7 116 81.0
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 1.9e-39 166.0 105 83.8
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.2e-39 164.9 107 83.2
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-38 163.3 114 78.9
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 2.0e-36 156.0 102 82.4
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-36 155.2 100 83.0
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-36 155.2 100 83.0
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-36 155.2 100 83.0
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-36 155.2 100 83.0
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-36 155.2 100 83.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 2.8e-35 152.1 91 84.6
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.8e-35 152.1 129 67.4
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 6.3e-35 151.0 96 82.3
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 6.3e-35 151.0 96 80.2
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 4.1e-34 148.3 123 66.7
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.5e-33 146.4 95 83.2
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.5e-33 146.4 95 83.2
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 6.1e-30 134.4 85 84.7
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.3e-29 132.5 128 60.2
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.3e-29 132.5 128 60.2
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 8.8e-29 130.6 77 89.6
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.7e-28 127.9 84 82.1
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 3.1e-26 122.1 74 86.5
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 1.7e-24 116.3 79 78.5
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 6.5e-24 114.4 72 81.9
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.2e-22 110.2 86 73.3
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.1e-22 109.4 72 81.9
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.0e-21 107.1 76 75.0
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-21 106.7 77 75.3
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.4e-21 106.7 68 83.8
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.3e-21 105.9 68 82.4
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.0e-21 105.1 76 75.0
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 8.8e-21 104.0 67 82.1
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.1e-20 103.6 67 82.1
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 3.3e-20 102.1 71 78.9
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.7e-20 101.3 68 79.4
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 7.4e-20 100.9 128 53.1
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 7.4e-20 100.9 64 81.2
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 2.2e-19 99.4 65 81.5
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 3.7e-19 98.6 65 76.9
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.8e-19 98.2 74 67.6
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 1.4e-18 96.7 79 72.2
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 1.6e-17 93.2 60 81.7
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 2.0e-17 92.8 60 76.7
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 1.3e-16 90.1 55 83.6
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.9e-16 89.0 124 48.4
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.0e-16 88.2 53 86.8
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 8.5e-16 87.4 79 63.3
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 8.0e-14 80.9 55 78.2
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 1.4e-13 80.1 49 85.7
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 5.2e-13 78.2 66 68.2
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 8.8e-13 77.4 45 84.4
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.4e-12 75.1 49 81.6
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.3e-11 73.6 65 63.1
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.2e-11 72.8 49 79.6
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 3.7e-11 72.0 89 46.1
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.8e-11 71.6 74 59.5
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.4e-10 69.3 46 78.3
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 9.1e-10 67.4 41 87.8
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.5e-09 65.1 37 86.5
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.5e-09 65.1 37 86.5
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 2.2e-08 62.8 41 78.0
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 1.9e-07 59.7 55 63.6
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 4.2e-07 58.5 83 47.0


User provided reference genes

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