Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G231033 Glycine max HOM05D001101 ORTHO05D000893 2.6e-113 412.1 221 100.0
Glyma.13G268500 Glycine max HOM05D001101 ORTHO05D000893 5.3e-66 255.0 180 81.7
VMungo1080G1788 Vigna mungo HOM05D001101 ORTHO05D000893 2.7e-62 242.7 193 72.5
Phvul.005G081000 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 1.5e-60 236.9 192 71.4
Psat0s2485g0080 Pisum sativum HOM05D001101 ORTHO05D000893 2.6e-52 209.5 167 68.9
Medtr2g075860 Medicago truncatula HOM05D001101 ORTHO05D000893 9.5e-47 191.0 167 64.7
Lj3g0007321 Lotus japonicus HOM05D001101 ORTHO05D000893 1.0e-45 187.6 168 66.1
arahy.Tifrunner.gnm1.ann1.I5PA0N Arachis hypogaea HOM05D001101 ORTHO05D000893 4.0e-45 185.7 213 53.1
Lj3g0027156 Lotus japonicus HOM05D001101 ORTHO05D000893 6.8e-45 184.9 200 55.5
QL08p025698 Quercus lobata HOM05D001101 ORTHO05D000893 1.5e-44 183.7 167 61.1
Gohir.A04G043400 Gossypium hirsutum HOM05D001101 ORTHO05D000893 1.3e-43 180.6 167 58.1
Manes.15G096600 Manihot esculenta HOM05D001101 ORTHO05D000893 1.3e-43 180.6 175 59.4
arahy.Tifrunner.gnm1.ann1.R550IY Arachis hypogaea HOM05D001101 ORTHO05D000893 2.2e-43 179.9 213 51.6
COL.COLO4_17509 Corchorus olitorius HOM05D001101 ORTHO05D000893 2.2e-43 179.9 193 54.9
Gohir.D05G340200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 2.8e-43 179.5 167 57.5
Gorai.009G366600 Gossypium raimondii HOM05D001101 ORTHO05D000893 2.8e-43 179.5 167 57.5
Manes.03G099900 Manihot esculenta HOM05D001101 ORTHO05D000893 3.7e-43 179.1 175 60.0
CiPaw.12G112600 Carya illinoinensis HOM05D001101 ORTHO05D000893 1.8e-42 176.8 167 59.9
Sabra11G0095800 Salix brachista HOM05D001101 ORTHO05D000893 4.1e-42 175.6 175 56.0
Lalb_Chr20g0109211 Lupinus albus HOM05D001101 ORTHO05D000893 7.0e-42 174.9 188 56.4
CANSAT35G0774 Cannabis sativa HOM05D001101 ORTHO05D000893 2.0e-41 173.3 195 50.3
Prupe.4G160200 Prunus persica HOM05D001101 ORTHO05D000893 2.0e-41 173.3 167 59.3
Ciclev10019902m.g Citrus clementina HOM05D001101 ORTHO05D000893 1.3e-40 170.6 173 57.2
Duzib213G1057 Durio zibethinus HOM05D001101 ORTHO05D000893 1.3e-40 170.6 167 58.1
Lalb_Chr03g0031231 Lupinus albus HOM05D001101 ORTHO05D000893 1.3e-40 170.6 167 61.7
Cfa019545 Carpinus fangiana HOM05D001101 ORTHO05D000893 2.9e-40 169.5 167 56.3
Thecc.07G126600 Theobroma cacao HOM05D001101 ORTHO05D000893 3.8e-40 169.1 168 57.1
TWI38G2134 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 6.6e-40 168.3 167 54.5
Haze_09306 Corylus avellana HOM05D001101 ORTHO05D000893 1.1e-39 167.5 167 55.1
FAN16G1275 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.5e-39 166.4 189 50.3
FAN25G0535 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.5e-39 166.4 189 50.3
GSVIVG01014170001 Vitis vinifera HOM05D001101 ORTHO05D000893 2.5e-39 166.4 168 62.5
FvH4_3g18140 Fragaria vesca HOM05D001101 ORTHO05D000893 9.5e-39 164.5 189 49.7
Ca_06629_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 1.6e-38 163.7 209 49.8
FAN11G2831 Fragaria x ananassa HOM05D001101 ORTHO05D000893 2.8e-38 162.9 167 54.5
Potri.001G387500 Populus trichocarpa HOM05D001101 ORTHO05D000893 2.8e-38 162.9 167 55.7
RcHm_v2.0_Chr5g0030571 Rosa chinensis HOM05D001101 ORTHO05D000893 2.8e-38 162.9 189 51.3
Sabra16G0254800 Salix brachista HOM05D001101 ORTHO05D000893 1.0e-37 161.0 189 49.7
FAN21G1665 Fragaria x ananassa HOM05D001101 ORTHO05D000893 5.2e-37 158.7 167 53.3
Dinv18380 Davidia involucrata HOM05D001101 ORTHO05D000893 6.8e-37 158.3 193 50.8
TWI39G0632 Tripterygium wilfordii HOM05D001101 ORTHO05D000893 3.4e-36 156.0 167 50.3
Lj8A147G49 Lonicera japonica HOM05D001101 ORTHO05D000893 9.8e-36 154.5 207 47.8
Potri.011G107800 Populus trichocarpa HOM05D001101 ORTHO05D000893 1.7e-35 153.7 167 52.7
Eucgr.F03283 Eucalyptus grandis HOM05D001101 ORTHO05D000893 6.4e-35 151.8 167 53.9
MD11G1265700 Malus domestica HOM05D001101 ORTHO05D000893 1.1e-34 151.0 167 52.7
DCAR_013271 Daucus carota HOM05D001101 ORTHO05D000893 2.4e-34 149.8 193 47.7
Cpa.g.sc77.33 Carica papaya HOM05D001101 ORTHO05D000893 3.2e-34 149.4 168 53.6
CiPaw.11G158700 Carya illinoinensis HOM05D001101 ORTHO05D000893 9.2e-34 147.9 168 52.4
vmacro11953 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 1.2e-33 147.5 178 55.6
Rhsim06G0210100 Rhododendron simsii HOM05D001101 ORTHO05D000893 4.6e-33 145.6 172 53.5
TAR626G0991 Trochodendron aralioides HOM05D001101 ORTHO05D000893 7.8e-33 144.8 169 51.5
ClCG07G010190 Citrullus lanatus HOM05D001101 ORTHO05D000893 5.0e-32 142.1 167 48.5
TAR627G0318 Trochodendron aralioides HOM05D001101 ORTHO05D000893 5.0e-32 142.1 169 51.5
Sed0014809 Sechium edule HOM05D001101 ORTHO05D000893 6.6e-32 141.7 167 46.1
Actinidia18809 Actinidia chinensis HOM05D001101 ORTHO05D000893 1.1e-31 141.0 169 53.3
MELO3C016123.2 Cucumis melo HOM05D001101 ORTHO05D000893 2.5e-31 139.8 167 49.1
Peaxi162Scf00111g01465 Petunia axillaris HOM05D001101 ORTHO05D000893 2.5e-31 139.8 211 41.7
Oeu031024.1 Olea europaea HOM05D001101 ORTHO05D000893 1.2e-30 137.5 196 46.4
Nn6g34473 Nelumbo nucifera HOM05D001101 ORTHO05D000893 8.0e-30 134.8 169 49.7
CsaV3_4G008130 Cucumis sativus L. HOM05D001101 ORTHO05D000893 1.0e-29 134.4 166 47.0
CSS0019453 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 1.4e-29 134.0 170 48.8
Hma1.2p1_1650F.1_g295650 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 6.8e-29 131.7 172 50.0
Aa31LG8G2070 Aethionema arabicum HOM05D001101 ORTHO05D000893 2.6e-28 129.8 196 41.8
Nitab4.5_0000788g0050 Nicotiana tabacum HOM05D001101 ORTHO05D000893 2.6e-28 129.8 170 48.2
CAN.G375.25 Capsicum annuum HOM05D001101 ORTHO05D000893 4.4e-28 129.0 170 47.6
Nitab4.5_0016997g0010 Nicotiana tabacum HOM05D001101 ORTHO05D000893 4.4e-28 129.0 205 44.9
THA.LOC104815575 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 4.4e-28 129.0 169 49.7
Sopen07g030570 Solanum pennellii HOM05D001101 ORTHO05D000893 1.3e-27 127.5 170 48.2
Nn3g21084 Nelumbo nucifera HOM05D001101 ORTHO05D000893 2.2e-27 126.7 169 47.3
Cc05_g10950 Coffea canephora HOM05D001101 ORTHO05D000893 8.3e-27 124.8 193 40.4
Hma1.2p1_1872F.1_g306120 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 8.3e-27 124.8 136 53.7
MBI06_g16699_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 1.1e-26 124.4 170 47.1
SalBow1G6953 Salvia bowleyana HOM05D001101 ORTHO05D000893 1.1e-26 124.4 169 45.0
SalBow8G2079 Salvia bowleyana HOM05D001101 ORTHO05D000893 1.1e-26 124.4 169 45.0
Medtr8g058280 Medicago truncatula HOM05D001101 ORTHO05D000893 1.4e-26 124.0 149 51.0
Solyc07g062300.3 Solanum lycopersicum HOM05D001101 ORTHO05D000893 2.4e-26 123.2 170 47.1
CSS0031512 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 9.2e-26 121.3 172 47.7
PGSC0003DMG400007097 Solanum tuberosum HOM05D001101 ORTHO05D000893 3.5e-25 119.4 170 46.5
Sp3g13070 Schrenkiella parvula HOM05D001101 ORTHO05D000893 4.6e-25 119.0 199 42.7
MSTRG.6684 Avicennia marina HOM05D001101 ORTHO05D000893 1.3e-24 117.5 193 40.4
AUR62037563 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.3e-24 117.5 169 45.0
Sc03g0010600 Simmondsia chinensis HOM05D001101 ORTHO05D000893 1.3e-24 117.5 169 42.6
AL3G27180 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 2.3e-24 116.7 200 40.5
AUR62019596 Chenopodium quinoa HOM05D001101 ORTHO05D000893 3.0e-24 116.3 196 39.8
ECA236G1330 Erigeron canadensis HOM05D001101 ORTHO05D000893 3.9e-24 115.9 203 40.4
A03p39010 Brassica napus HOM05D001101 ORTHO05D000893 6.6e-24 115.2 197 41.6
AT3G14860 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 1.5e-23 114.0 170 44.7
Thhalv10020396m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 3.3e-23 112.8 169 45.6
SGA_v2.0_scaffold73G24397 Striga asiatica HOM05D001101 ORTHO05D000893 3.3e-23 112.8 171 45.6
EL10Ac9g23028 Beta vulgaris HOM05D001101 ORTHO05D000893 5.6e-23 112.1 212 39.6
Ah.06g185540 Amaranthus hybridus HOM05D001101 ORTHO05D000893 7.3e-23 111.7 195 38.5
CDE10G0134 Ceratophyllum demersum HOM05D001101 ORTHO05D000893 9.5e-23 111.3 160 43.8
PGR031G1547 Punica granatum HOM05D001101 ORTHO05D000893 9.5e-23 111.3 166 43.4
VMungo1127G0294 Vigna mungo HOM05D001101 ORTHO05D000893 1.2e-22 110.9 165 43.6
Carub.0003s1452 Capsella rubella HOM05D001101 ORTHO05D000893 2.8e-22 109.8 169 42.6
C03p47290 Brassica napus HOM05D001101 ORTHO05D000893 3.6e-22 109.4 185 41.6
BolC3t16997H Brassica oleracea HOM05D001101 ORTHO05D000893 4.7e-22 109.0 193 40.9
MBI07_g00455_MAGBIO Magnolia biondii HOM05D001101 ORTHO05D000893 4.7e-22 109.0 172 41.9
BraA03t13051Z Brassica rapa HOM05D001101 ORTHO05D000893 6.2e-22 108.6 220 38.6
Lsat_1_v5_gn_7_102241 Lactuca sativa HOM05D001101 ORTHO05D000893 1.4e-21 107.5 169 43.8
HanXRQChr04g0108531 Helianthus annuus HOM05D001101 ORTHO05D000893 1.8e-21 107.1 167 44.9
BcaB04g20957 Brassica carinata HOM05D001101 ORTHO05D000893 2.3e-21 106.7 187 41.7
CARHR089800 Cardamine hirsuta HOM05D001101 ORTHO05D000893 4.0e-21 105.9 171 44.4
PSO541G3246 Papaver somniferum HOM05D001101 ORTHO05D000893 2.0e-20 103.6 170 41.2
Os02g0234200 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 2.6e-20 103.2 169 40.2
Aqoxy1G01983 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 4.4e-20 102.4 167 39.5
MSTRG.14970 Avicennia marina HOM05D001101 ORTHO05D000893 4.9e-19 99.0 168 40.5
TPR.G16052 Trifolium pratense HOM05D001101 ORTHO05D000893 6.4e-19 98.6 80 65.0
PSO675G9353 Papaver somniferum HOM05D001101 ORTHO05D000893 1.2e-17 94.4 169 38.5
Actinidia35207 Actinidia chinensis HOM05D001101 ORTHO05D000893 3.5e-17 92.8 169 40.8
unitig_747.g21588 Utricularia gibba HOM05D001101 ORTHO05D000893 1.0e-16 91.3 172 39.5
CsaV3_4G033000 Cucumis sativus L. HOM05D001101 ORTHO05D000893 6.6e-16 88.6 210 35.7
Migut.M00709 Erythranthe guttata HOM05D001101 ORTHO05D000893 6.6e-16 88.6 141 39.0
HPP92_020070 Vanilla planifolia HOM05D001101 ORTHO05D003060 3.3e-15 86.3 168 34.5
MELO3C025648.2 Cucumis melo HOM05D001101 ORTHO05D000893 5.6e-15 85.5 210 36.2
Zm00001eb239070 Zea mays HOM05D001101 ORTHO05D000893 5.6e-15 85.5 169 38.5
Phvul.011G166300 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 1.8e-13 80.5 143 39.2
Eucgr.L01895 Eucalyptus grandis HOM05D001101 ORTHO05D000893 9.9e-12 74.7 74 58.1
ClCG11G017370 Citrullus lanatus HOM05D001101 ORTHO05D000893 3.2e-10 69.7 199 33.7
Hund10538 Selenicereus undatus HOM05D001101 ORTHO05D000893 4.6e-09 65.9 194 29.4
BcaC09g48454 Brassica carinata HOM05D001101 ORTHO05D000893 1.5e-07 60.8 136 34.6
A01p38980 Brassica napus HOM05D001101 ORTHO05D000893 9.6e-07 58.2 128 35.2
BraA01t03944Z Brassica rapa HOM05D001101 ORTHO05D000893 9.6e-07 58.2 128 35.2


User provided reference genes

Program Settings