Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 3.8e-28 127.5 66 100.0
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 6.8e-25 116.7 68 94.1
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 8.0e-18 93.2 71 71.8
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 3.0e-17 91.3 70 70.0
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 1.5e-16 89.0 70 68.6
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 4.4e-16 87.4 76 64.5
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 4.4e-16 87.4 74 63.5
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 5.7e-16 87.0 75 61.3
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 9.8e-16 86.3 73 64.4
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 1.7e-15 85.5 73 65.8
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 2.4e-14 81.6 70 58.6
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 1.1e-11 72.8 66 56.1
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 1.6e-10 68.9 72 54.2
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 1.6e-10 68.9 47 63.8
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 3.6e-10 67.8 47 63.8
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 3.6e-10 67.8 46 69.6
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 4.7e-10 67.4 52 63.5
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 6.1e-10 67.0 47 63.8
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 8.0e-10 66.6 58 53.4
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 6.8e-09 63.5 47 59.6
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 6.8e-09 63.5 47 61.7
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 8.9e-09 63.2 47 61.7
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 8.9e-09 63.2 65 50.8
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 2.0e-08 62.0 61 55.7
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 2.6e-08 61.6 70 45.7
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 2.6e-08 61.6 68 50.0
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 2.6e-08 61.6 47 59.6
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 3.4e-08 61.2 47 57.4
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 3.4e-08 61.2 65 49.2
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 4.4e-08 60.8 48 62.5
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 4.4e-08 60.8 44 61.4
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 1.3e-07 59.3 65 47.7
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 1.3e-07 59.3 48 58.3
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 1.7e-07 58.9 66 43.9
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 2.9e-07 58.2 46 58.7
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 3.7e-07 57.8 40 62.5
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 4.9e-07 57.4 54 51.9
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 4.9e-07 57.4 47 61.7
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 6.4e-07 57.0 64 45.3
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 8.3e-07 56.6 56 48.2
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 1.1e-06 56.2 67 46.3
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.4e-06 55.8 48 54.2
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.4e-06 55.8 48 54.2
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 1.4e-06 55.8 48 54.2
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 3.2e-06 54.7 65 50.8
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 3.2e-06 54.7 41 63.4
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 5.4e-06 53.9 47 57.4
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 7.0e-06 53.5 61 45.9
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 9.2e-06 53.1 39 59.0


User provided reference genes

Program Settings