Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G225400 Glycine max HOM05D006845 ORTHO05D009300 1.0e-251 872.8 422 100.0
Glyma.13G275900 Glycine max HOM05D006845 ORTHO05D009300 5.3e-248 860.5 422 98.6
VMungo1080G1688 Vigna mungo HOM05D006845 ORTHO05D009300 2.5e-229 798.5 422 91.5
Phvul.005G073100 Phaseolus vulgaris HOM05D006845 ORTHO05D009300 7.4e-226 786.9 422 89.8
Lj3g0006633 Lotus japonicus HOM05D006845 ORTHO05D009300 1.3e-217 759.6 421 86.7
Lalb_Chr25g0286311 Lupinus albus HOM05D006845 ORTHO05D009300 1.1e-213 746.5 408 85.3
arahy.Tifrunner.gnm1.ann1.61G52X Arachis hypogaea HOM05D006845 ORTHO05D009300 6.1e-212 740.7 421 83.1
arahy.Tifrunner.gnm1.ann1.ME6152 Arachis hypogaea HOM05D006845 ORTHO05D009300 3.4e-210 734.9 421 82.4
Thecc.07G091800 Theobroma cacao HOM05D006845 ORTHO05D009300 4.5e-207 724.5 424 79.2
Gohir.D08G031900 Gossypium hirsutum HOM05D006845 ORTHO05D009300 6.5e-206 720.7 424 78.5
Gohir.A08G021200 Gossypium hirsutum HOM05D006845 ORTHO05D009300 1.5e-205 719.5 424 78.3
Gorai.004G029400 Gossypium raimondii HOM05D006845 ORTHO05D009300 4.7e-204 714.5 424 78.1
QL08p022228 Quercus lobata HOM05D006845 ORTHO05D009300 7.5e-202 707.2 423 77.3
Potri.011G118000 Populus trichocarpa HOM05D006845 ORTHO05D009300 1.1e-200 703.4 422 76.3
Prupe.4G179900 Prunus persica HOM05D006845 ORTHO05D009300 3.1e-200 701.8 422 77.0
PGR083G0376 Punica granatum HOM05D006845 ORTHO05D009300 3.1e-200 701.8 424 76.4
Eucgr.F01150 Eucalyptus grandis HOM05D006845 ORTHO05D009300 1.2e-199 699.9 425 76.5
Dinv14926 Davidia involucrata HOM05D006845 ORTHO05D009300 4.5e-199 698.0 423 76.4
CiPaw.11G170600 Carya illinoinensis HOM05D006845 ORTHO05D009300 5.9e-199 697.6 411 78.8
Potri.001G398900 Populus trichocarpa HOM05D006845 ORTHO05D009300 1.7e-198 696.0 412 77.7
CANSAT56G3540 Cannabis sativa HOM05D006845 ORTHO05D009300 2.9e-198 695.3 427 74.7
Ciclev10008389m.g Citrus clementina HOM05D006845 ORTHO05D009300 6.6e-198 694.1 428 75.7
Cfa020572 Carpinus fangiana HOM05D006845 ORTHO05D009300 8.6e-198 693.7 413 78.7
FvH4_3g19780 Fragaria vesca HOM05D006845 ORTHO05D009300 1.5e-197 693.0 421 76.2
MD11G1250000 Malus domestica HOM05D006845 ORTHO05D009300 3.3e-197 691.8 422 75.1
RcHm_v2.0_Chr5g0033181 Rosa chinensis HOM05D006845 ORTHO05D009300 9.5e-197 690.3 421 75.8
Manes.15G087900 Manihot esculenta HOM05D006845 ORTHO05D009300 2.8e-196 688.7 423 76.1
GSVIVG01014313001 Vitis vinifera HOM05D006845 ORTHO05D009300 6.1e-196 687.6 425 74.1
COL.COLO4_27185 Corchorus olitorius HOM05D006845 ORTHO05D009300 8.0e-196 687.2 424 74.8
Nn1g06500 Nelumbo nucifera HOM05D006845 ORTHO05D009300 1.8e-195 686.0 424 74.1
ClCG11G018010 Citrullus lanatus HOM05D006845 ORTHO05D009300 3.0e-195 685.3 414 75.4
MELO3C016692.2 Cucumis melo HOM05D006845 ORTHO05D009300 1.2e-194 683.3 420 74.5
CsaV3_4G033630 Cucumis sativus L. HOM05D006845 ORTHO05D009300 3.4e-194 681.8 422 74.6
Hma1.2p1_0898F.1_g234490 Hydrangea macrophylla HOM05D006845 ORTHO05D009300 4.4e-194 681.4 414 74.6
TAR627G0110 Trochodendron aralioides HOM05D006845 ORTHO05D009300 7.5e-194 680.6 425 73.2
Solyc12g013890.2 Solanum lycopersicum HOM05D006845 ORTHO05D009300 1.3e-193 679.9 426 73.5
Sed0008037 Sechium edule HOM05D006845 ORTHO05D009300 1.7e-193 679.5 422 75.1
Sopen12g007210 Solanum pennellii HOM05D006845 ORTHO05D009300 1.7e-193 679.5 426 73.2
CSS0022560 Camellia sinensis var. sinensis HOM05D006845 ORTHO05D009300 4.9e-193 677.9 426 72.8
FAN11G1119 Fragaria x ananassa HOM05D006845 ORTHO05D009300 7.0e-192 674.1 415 75.4
MSTRG.14352 Avicennia marina HOM05D006845 ORTHO05D009300 1.2e-191 673.3 426 73.2
Atru.chr2.2481 Acer truncatum HOM05D006845 ORTHO05D009300 1.6e-191 672.9 406 77.3
AT5G53860 Arabidopsis thaliana HOM05D006845 ORTHO05D009300 1.6e-191 672.9 423 74.5
Carub.0008s1415 Capsella rubella HOM05D006845 ORTHO05D009300 2.0e-191 672.5 423 74.0
AL8G28920 Arabidopsis lyrata HOM05D006845 ORTHO05D009300 3.5e-191 671.8 423 74.2
CARHR266990 Cardamine hirsuta HOM05D006845 ORTHO05D009300 3.5e-191 671.8 424 74.3
FAN21G2917 Fragaria x ananassa HOM05D006845 ORTHO05D009300 1.7e-190 669.5 426 73.7
PSO541G3085 Papaver somniferum HOM05D006845 ORTHO05D009300 6.6e-190 667.5 425 72.0
PSO675G5588 Papaver somniferum HOM05D006845 ORTHO05D009300 6.6e-190 667.5 425 71.8
C09p43870 Brassica napus HOM05D006845 ORTHO05D009300 8.6e-190 667.2 424 73.6
Migut.H01945 Erythranthe guttata HOM05D006845 ORTHO05D009300 1.1e-189 666.8 426 70.9
Aqoxy1G02380 Aquilegia oxysepala HOM05D006845 ORTHO05D009300 1.9e-189 666.0 422 72.5
BcaC04g20411 Brassica carinata HOM05D006845 ORTHO05D009300 2.5e-189 665.6 424 73.6
Sp6g15920 Schrenkiella parvula HOM05D006845 ORTHO05D009300 2.5e-189 665.6 424 73.6
A10p11250 Brassica napus HOM05D006845 ORTHO05D009300 3.3e-189 665.2 424 73.3
Thhalv10013651m.g Eutrema salsugineum HOM05D006845 ORTHO05D009300 3.3e-189 665.2 424 73.1
Oeu051072.2 Olea europaea HOM05D006845 ORTHO05D009300 2.8e-188 662.1 451 69.8
TWI39G1089 Tripterygium wilfordii HOM05D006845 ORTHO05D009300 4.7e-188 661.4 424 72.6
BcaB08g35745 Brassica carinata HOM05D006845 ORTHO05D009300 6.2e-188 661.0 424 73.1
CAN.G213.11 Capsicum annuum HOM05D006845 ORTHO05D009300 1.1e-187 660.2 416 72.6
Ca_03508_v3 Cicer arietinum L. HOM05D006845 ORTHO05D009300 3.1e-187 658.7 409 76.5
AUR62039192 Chenopodium quinoa HOM05D006845 ORTHO05D009300 6.8e-187 657.5 424 71.5
MD03G1229200 Malus domestica HOM05D006845 ORTHO05D009300 2.0e-186 656.0 423 73.3
Duzib213G0603 Durio zibethinus HOM05D006845 ORTHO05D009300 7.5e-186 654.1 422 73.2
AUR62019438 Chenopodium quinoa HOM05D006845 ORTHO05D009300 2.2e-185 652.5 413 71.7
HanXRQChr12g0364151 Helianthus annuus HOM05D006845 ORTHO05D009300 2.2e-185 652.5 425 70.1
EL10Ac4g08199 Beta vulgaris HOM05D006845 ORTHO05D009300 1.4e-184 649.8 423 70.0
THA.LOC104811867 Tarenaya hassleriana HOM05D006845 ORTHO05D009300 1.4e-184 649.8 424 72.2
FAN25G1923 Fragaria x ananassa HOM05D006845 ORTHO05D009300 7.0e-184 647.5 421 72.0
Actinidia18770 Actinidia chinensis HOM05D006845 ORTHO05D009300 1.7e-182 642.9 398 72.1
CDE02G1035 Ceratophyllum demersum HOM05D006845 ORTHO05D009300 1.1e-181 640.2 422 67.5
DCAR_017135 Daucus carota HOM05D006845 ORTHO05D009300 1.5e-181 639.8 410 71.0
Aa31LG3G10070 Aethionema arabicum HOM05D006845 ORTHO05D009300 9.5e-181 637.1 403 73.4
Sabra16G0261500 Salix brachista HOM05D006845 ORTHO05D009300 9.5e-181 637.1 541 59.3
Nitab4.5_0003378g0090 Nicotiana tabacum HOM05D006845 ORTHO05D009300 6.2e-180 634.4 426 70.4
ATR0737G060 Amborella trichopoda HOM05D006845 ORTHO05D009300 2.3e-179 632.5 425 67.5
FAN16G0640 Fragaria x ananassa HOM05D006845 ORTHO05D009300 2.3e-179 632.5 415 71.8
Lsat_1_v5_gn_9_97520 Lactuca sativa HOM05D006845 ORTHO05D009300 1.4e-176 623.2 413 69.7
Peaxi162Scf00000g00345 Petunia axillaris HOM05D006845 ORTHO05D009300 1.4e-176 623.2 426 69.0
BolC9t57269H Brassica oleracea HOM05D006845 ORTHO05D009300 7.8e-175 617.5 435 68.3
Psat5g242160 Pisum sativum HOM05D006845 ORTHO05D009300 1.8e-171 606.3 394 73.6
BraA10t43218Z Brassica rapa HOM05D006845 ORTHO05D009300 3.1e-171 605.5 469 64.2
SGA_v2.0_scaffold70G23678 Striga asiatica HOM05D006845 ORTHO05D009300 2.0e-170 602.8 404 68.3
Medtr2g079060 Medicago truncatula HOM05D006845 ORTHO05D009300 2.2e-169 599.4 413 71.2
Ah.06g184430 Amaranthus hybridus HOM05D006845 ORTHO05D009300 2.3e-166 589.3 413 67.3
Nitab4.5_0000332g0060 Nicotiana tabacum HOM05D006845 ORTHO05D009300 8.7e-166 587.4 459 62.7
HPP92_003615 Vanilla planifolia HOM05D006845 ORTHO05D009300 2.1e-164 582.8 420 63.8
TPR.G7949 Trifolium pratense HOM05D006845 ORTHO05D009300 4.6e-159 565.1 365 74.0
Actinidia35244 Actinidia chinensis HOM05D006845 ORTHO05D009300 1.9e-152 543.1 424 60.8
Lj1C841T8 Lonicera japonica HOM05D006845 ORTHO05D009300 1.4e-147 526.9 390 64.9
Sc16g0007040 Simmondsia chinensis HOM05D006845 ORTHO05D009300 1.9e-144 516.5 313 76.0
ECA240G2176 Erigeron canadensis HOM05D006845 ORTHO05D009300 2.1e-143 513.1 314 75.2
Haze_09439 Corylus avellana HOM05D006845 ORTHO05D009300 5.6e-141 505.0 388 66.0
Cpa.g.sc80.77 Carica papaya HOM05D006845 ORTHO05D009300 7.1e-136 488.0 424 58.5
SEGI_13558 Sequoiadendron giganteum HOM05D006845 ORTHO05D009300 4.7e-95 352.4 347 44.7
Cc05_g11920 Coffea canephora HOM05D006845 ORTHO05D009300 2.6e-93 346.7 203 77.8
BcaB07g33336 Brassica carinata HOM05D006845 ORTHO05D009300 2.8e-92 343.2 212 73.1
Pp3c1_32740 Physcomitrium patens HOM05D006845 ORTHO05D009300 8.0e-87 325.1 345 45.5
Cc05_g11930 Coffea canephora HOM05D006845 ORTHO05D009300 5.2e-86 322.4 208 68.3
AagrBONN_evm.TU.Sc2ySwM_344.572 Anthoceros agrestis HOM05D006845 ORTHO05D009300 3.1e-83 313.2 347 42.4
Mapoly0037s0133 Marchantia polymorpha HOM05D006845 ORTHO05D009300 2.3e-73 280.4 367 36.5
SMO143G0137 Selaginella moellendorffii HOM05D006845 ORTHO05D009300 9.9e-61 238.4 281 40.9
unitig_899.g15568 Utricularia gibba HOM05D006845 ORTHO05D009300 8.1e-47 192.2 106 79.2
Sabra11G0103000 Salix brachista HOM05D006845 ORTHO05D009300 4.2e-35 153.3 86 81.4
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 1.6e-34 151.4 106 65.1
BcaB04g16942 Brassica carinata HOM05D006845 ORTHO05D009300 1.1e-32 145.2 139 56.8
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 1.1e-32 145.2 109 62.4
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 1.1e-32 145.2 109 62.4
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 5.6e-32 142.9 106 62.3
FAN12G2298 Fragaria x ananassa HOM05D006845 ORTHO05D014206 4.6e-10 70.1 49 65.3
FAN25G3098 Fragaria x ananassa HOM05D006845 ORTHO05D014206 1.4e-09 68.6 49 65.3
FAN05G4902 Fragaria x ananassa HOM05D006845 ORTHO05D014206 2.3e-09 67.8 50 62.0
Hma1.2p1_0554F.1_g177810 Hydrangea macrophylla HOM05D006845 ORTHO05D014206 6.7e-09 66.2 56 55.4
MBI02_g32976_MAGBIO Magnolia biondii HOM05D000872 ORTHO05D014206 6.7e-09 66.2 63 50.8
FAN09G2373 Fragaria x ananassa HOM05D006845 ORTHO05D014206 1.1e-06 58.9 48 58.3


User provided reference genes

Program Settings