Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.9e-103 380.2 379 100.0
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.2e-89 334.3 174 97.7
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 3.4e-89 332.8 174 97.1
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 8.5e-88 328.2 381 92.9
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.8e-85 320.5 174 92.5
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.8e-85 320.5 174 92.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 9.7e-84 314.7 173 91.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 7.0e-82 308.5 173 89.0
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.6e-81 307.4 172 90.1
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 2.6e-81 306.6 174 87.9
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.0e-80 304.7 173 88.4
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.1e-79 301.2 174 86.8
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.6e-78 297.4 174 86.2
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.6e-78 297.4 174 85.6
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.6e-78 297.4 172 86.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 2.1e-78 297.0 172 84.9
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 4.7e-78 295.8 174 85.6
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 6.1e-78 295.4 174 85.1
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 6.1e-78 295.4 174 85.1
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 8.8e-77 291.6 174 83.9
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 8.8e-77 291.6 173 83.8
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 8.8e-77 291.6 169 85.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 2.0e-76 290.4 174 83.3
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 2.0e-76 290.4 174 83.3
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.6e-76 290.0 174 83.3
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 4.4e-76 289.3 174 83.3
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 4.4e-76 289.3 174 85.1
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 7.5e-76 288.5 174 83.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.7e-75 287.3 173 83.8
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.7e-75 287.3 174 81.0
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.7e-75 287.3 174 83.3
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 4.8e-75 285.8 174 82.2
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 6.3e-75 285.4 170 82.9
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.2e-75 285.0 169 83.4
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.1e-74 284.6 172 83.1
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 1.1e-74 284.6 173 84.4
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.8e-74 283.9 172 81.4
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.8e-74 283.9 172 82.6
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 2.4e-74 283.5 174 81.0
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 4.1e-74 282.7 172 83.1
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.1e-74 282.7 169 82.8
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 7.0e-74 282.0 174 81.6
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.2e-73 281.2 172 82.6
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 2.7e-73 280.0 168 82.1
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 5.9e-73 278.9 167 84.4
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 5.9e-73 278.9 170 82.4
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 7.7e-73 278.5 171 83.0
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 3.8e-72 276.2 171 81.3
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 3.8e-72 276.2 174 81.0
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 5.0e-72 275.8 174 80.5
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 3.2e-71 273.1 174 77.6
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 4.2e-71 272.7 174 79.9
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.5e-71 272.3 170 80.0
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.5e-71 272.3 170 80.0
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.6e-70 270.8 174 79.3
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 4.0e-69 266.2 150 91.3
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 4.0e-69 266.2 174 78.2
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 2.6e-68 263.5 172 79.7
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 3.7e-67 259.6 168 76.8
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.1e-66 258.1 174 73.0
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.4e-66 257.7 174 72.4
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 4.1e-66 256.1 174 73.0
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 4.1e-66 256.1 174 73.0
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 4.1e-66 256.1 174 73.0
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 4.1e-66 256.1 174 73.0
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 4.1e-66 256.1 174 73.0
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 9.1e-66 255.0 174 72.4
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.1e-66 255.0 217 65.0
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.2e-65 254.6 172 75.6
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.6e-65 254.2 174 74.7
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 4.5e-65 252.7 174 71.8
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.0e-64 251.5 206 66.0
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.3e-64 251.1 168 74.4
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.3e-64 250.4 167 74.9
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.9e-64 250.0 174 71.3
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 2.9e-64 250.0 174 71.3
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 5.0e-64 249.2 170 75.3
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 1.1e-63 248.1 202 62.9
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.5e-63 245.7 172 73.8
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 7.2e-63 245.4 198 66.2
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.2e-62 244.6 156 79.5
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 4.7e-62 242.7 168 74.4
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.0e-61 240.0 167 71.3
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 2.2e-59 233.8 149 80.5
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.8e-59 233.4 171 71.3
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 6.3e-59 232.3 170 70.6
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 4.1e-58 229.6 152 77.6
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 2.7e-57 226.9 167 68.3
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 4.5e-57 226.1 169 68.6
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 4.5e-57 226.1 149 78.5
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 5.0e-56 222.6 189 64.6
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 5.0e-56 222.6 160 74.4
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 5.6e-55 219.2 156 72.4
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 4.4e-52 209.5 173 61.8
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 8.3e-51 205.3 167 62.9
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.6e-49 201.1 150 69.3
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.0e-49 200.7 131 74.8
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.1e-45 188.3 119 81.5
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 6.0e-33 146.0 73 90.4
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 8.6e-32 142.1 108 68.5
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.5e-31 140.6 108 67.6
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.2e-30 138.3 93 81.7
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.2e-28 131.7 157 52.9
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 7.6e-28 129.0 69 82.6
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.4e-27 125.6 65 87.7
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.1e-25 120.9 163 42.3
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 7.8e-25 119.0 93 68.8
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 4.3e-23 113.2 79 78.5
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 3.6e-22 110.2 171 36.8
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.4e-21 108.2 71 67.6
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.4e-18 97.4 78 71.8
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.6e-17 94.7 78 69.2
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 6.0e-17 92.8 69 75.4
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.3e-16 91.7 75 62.7
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.5e-15 88.2 51 92.2
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 1.3e-14 85.1 64 73.4
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 6.2e-14 82.8 64 67.2
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 2.4e-10 70.9 40 90.0
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 5.4e-10 69.7 50 82.0
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 2.3e-08 64.3 35 85.7
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 3.0e-08 63.9 39 84.6
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 8.7e-08 62.4 31 87.1


User provided reference genes

Program Settings