Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G221900 Glycine max HOM05D001676 ORTHO05D001539 4.0e-140 501.9 352 100.0
Glyma.13G279600 Glycine max HOM05D001676 ORTHO05D001539 1.9e-110 403.3 354 75.1
Phvul.005G084000 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 8.4e-90 334.7 355 78.3
VMungo1080G1862 Vigna mungo HOM05D001676 ORTHO05D001539 2.2e-82 310.1 323 78.0
Lj3g0015268 Lotus japonicus HOM05D001676 ORTHO05D001539 3.8e-66 256.1 364 49.2
Medtr2g079850 Medicago truncatula HOM05D001676 ORTHO05D001539 3.8e-66 256.1 354 50.8
Lalb_Chr25g0286571 Lupinus albus HOM05D001676 ORTHO05D001539 4.2e-65 252.7 354 48.6
TPR.G39001 Trifolium pratense HOM05D001676 ORTHO05D001539 3.1e-60 236.5 352 50.9
Psat5g245760 Pisum sativum HOM05D001676 ORTHO05D001539 6.1e-56 222.2 351 54.1
Ca_01824_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 2.0e-51 207.2 352 45.2
arahy.Tifrunner.gnm1.ann1.KG9X9B Arachis hypogaea HOM05D001676 ORTHO05D001539 3.4e-46 189.9 368 41.0
arahy.Tifrunner.gnm1.ann1.FB4L04 Arachis hypogaea HOM05D001676 ORTHO05D001539 1.7e-42 177.6 355 45.6
Duzib213G0977 Durio zibethinus HOM05D001676 ORTHO05D001539 9.5e-25 118.6 367 33.8
Duzib170G0203 Durio zibethinus HOM05D001676 ORTHO05D001539 6.8e-23 112.5 368 31.8
Thecc.07G076300 Theobroma cacao HOM05D001676 ORTHO05D001539 1.2e-22 111.7 357 33.9
Haze_09483 Corylus avellana HOM05D001676 ORTHO05D001539 2.6e-22 110.5 362 32.3
Haze_09487 Corylus avellana HOM05D001676 ORTHO05D001539 2.6e-22 110.5 362 32.3
CSS0017655 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 3.4e-22 110.2 370 29.7
CSS0018188 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 3.4e-22 110.2 370 29.7
Gorai.002G073400 Gossypium raimondii HOM05D001676 ORTHO05D001539 3.7e-21 106.7 370 32.2
RcHm_v2.0_Chr5g0034651 Rosa chinensis HOM05D001676 ORTHO05D001539 3.7e-21 106.7 367 28.3
Gohir.A01G066300 Gossypium hirsutum HOM05D001676 ORTHO05D001539 1.4e-20 104.8 367 31.6
COL.COLO4_09442 Corchorus olitorius HOM05D001676 ORTHO05D001539 5.4e-20 102.8 362 34.5
Atru.chr2.2752 Acer truncatum HOM05D001676 ORTHO05D001539 1.2e-19 101.7 364 29.9
Cfa020541 Carpinus fangiana HOM05D001676 ORTHO05D001539 1.6e-19 101.3 372 30.4
Gohir.D01G053600 Gossypium hirsutum HOM05D001676 ORTHO05D001539 4.6e-19 99.8 363 34.4
GSVIVG01014394001 Vitis vinifera HOM05D001676 ORTHO05D001539 6.0e-19 99.4 356 32.6
CiPaw.11G173700 Carya illinoinensis HOM05D001676 ORTHO05D001539 2.3e-18 97.4 367 30.0
Actinidia09985 Actinidia chinensis HOM05D001676 ORTHO05D001539 3.0e-18 97.1 370 30.0
MD03G1223400 Malus domestica HOM05D001676 ORTHO05D001539 3.9e-18 96.7 362 31.5
Dinv08318 Davidia involucrata HOM05D001676 ORTHO05D001539 8.6e-18 95.5 344 29.1
Potri.011G122900 Populus trichocarpa HOM05D001676 ORTHO05D001539 1.5e-17 94.7 376 31.9
QL08p019602 Quercus lobata HOM05D001676 ORTHO05D001539 1.5e-17 94.7 374 31.3
ClCG11G018250 Citrullus lanatus HOM05D001676 ORTHO05D001539 2.5e-17 94.0 373 29.0
Medtr1g105085 Medicago truncatula HOM05D025777 ORTHO05D001539 3.3e-17 93.6 89 60.7
Prupe.4G186100 Prunus persica HOM05D001676 ORTHO05D001539 4.3e-17 93.2 367 30.2
MD11G1241400 Malus domestica HOM05D001676 ORTHO05D001539 1.2e-16 91.7 358 31.8
Gorai.013G167500 Gossypium raimondii HOM05D001676 ORTHO05D001539 2.8e-16 90.5 363 28.1
Gohir.1Z049612 Gossypium hirsutum HOM05D001676 ORTHO05D001539 1.4e-15 88.2 363 28.1
Medtr7g105760 Medicago truncatula HOM05D025777 ORTHO05D001539 3.1e-15 87.0 84 59.5
FAN21G2156 Fragaria x ananassa HOM05D001676 ORTHO05D001539 6.8e-15 85.9 382 29.3
FAN16G2678 Fragaria x ananassa HOM05D001676 ORTHO05D001539 1.2e-14 85.1 382 29.3
FvH4_3g20630 Fragaria vesca HOM05D001676 ORTHO05D001539 4.4e-14 83.2 382 29.1
FAN11G2190 Fragaria x ananassa HOM05D001676 ORTHO05D001539 5.8e-14 82.8 383 29.2
Potri.001G403700 Populus trichocarpa HOM05D001676 ORTHO05D001539 5.8e-14 82.8 373 28.7
CiPaw.12G121300 Carya illinoinensis HOM05D001676 ORTHO05D001539 7.5e-14 82.4 299 28.4
Sabra16G0265300 Salix brachista HOM05D001676 ORTHO05D001539 4.9e-13 79.7 373 27.9
Hma1.2p1_0600F.1_g187090 Hydrangea macrophylla HOM05D001676 ORTHO05D001539 1.9e-12 77.8 330 31.2
Sabra11G0108500 Salix brachista HOM05D001676 ORTHO05D001539 2.4e-12 77.4 379 30.6
PGR083G0774 Punica granatum HOM05D001676 ORTHO05D001539 1.6e-11 74.7 374 34.8
MELO3C016717.2 Cucumis melo HOM05D001676 ORTHO05D001539 3.5e-11 73.6 369 26.3
MSTRG.14369 Avicennia marina HOM05D001676 ORTHO05D001539 3.9e-10 70.1 360 27.2
Cpa.g.sc80.26 Carica papaya HOM05D001676 ORTHO05D001539 1.1e-09 68.6 376 29.0
Oeu008019.1 Olea europaea HOM05D001676 ORTHO05D001539 1.1e-09 68.6 368 26.4
CANSAT56G1624 Cannabis sativa HOM05D001676 ORTHO05D001539 1.9e-09 67.8 351 27.6
Sc16g0006890 Simmondsia chinensis HOM05D001676 ORTHO05D001539 4.3e-09 66.6 195 32.3
Medtr8g107170 Medicago truncatula HOM05D025777 ORTHO05D001539 5.6e-09 66.2 59 61.0
SalBow7G3227 Salvia bowleyana HOM05D001676 ORTHO05D001539 9.5e-09 65.5 384 25.3
Medtr6g009120 Medicago truncatula HOM05D025777 ORTHO05D001539 1.2e-08 65.1 103 44.7
Manes.03G113600 Manihot esculenta HOM05D001676 ORTHO05D001539 1.6e-08 64.7 370 27.6
TWI38G0110 Tripterygium wilfordii HOM05D001676 ORTHO05D001539 1.6e-08 64.7 344 26.5
CAN.G162.81 Capsicum annuum HOM05D001676 ORTHO05D001539 2.1e-08 64.3 372 31.5
Medtr6g464960 Medicago truncatula HOM05D002187 ORTHO05D001539 3.6e-08 63.5 108 40.7
Nitab4.5_0010846g0010 Nicotiana tabacum HOM05D001676 ORTHO05D001539 3.6e-08 63.5 370 25.1
Sed0003515 Sechium edule HOM05D001676 ORTHO05D001539 3.6e-08 63.5 86 50.0
Cc05_g12410 Coffea canephora HOM05D001676 ORTHO05D001539 4.7e-08 63.2 365 28.2
Rhsim06G0195700 Rhododendron simsii HOM05D001676 ORTHO05D001539 4.7e-08 63.2 376 26.1
CsaV3_4G033910 Cucumis sativus L. HOM05D001676 ORTHO05D001539 8.1e-08 62.4 86 50.0
A01p18590 Brassica napus HOM05D001676 ORTHO05D001539 6.8e-07 59.3 369 24.9
FAN25G0816 Fragaria x ananassa HOM05D001676 ORTHO05D001539 1.2e-06 58.5 103 40.8
C01p23610 Brassica napus HOM05D001676 ORTHO05D001539 2.6e-06 57.4 372 24.5
CARHR235100 Cardamine hirsuta HOM05D001676 ORTHO05D001539 3.4e-06 57.0 369 26.0
Peaxi162Scf00998g00033 Petunia axillaris HOM05D001676 ORTHO05D001539 4.4e-06 56.6 364 25.0
BolC1t02304H Brassica oleracea HOM05D001676 ORTHO05D001539 5.8e-06 56.2 367 28.6
BraA01t01809Z Brassica rapa HOM05D001676 ORTHO05D001539 7.6e-06 55.8 372 25.8
AUR62034225 Chenopodium quinoa HOM05D001676 ORTHO05D001539 9.9e-06 55.5 347 24.8
Migut.H01919 Erythranthe guttata HOM05D001676 ORTHO05D001539 9.9e-06 55.5 336 25.0
SGA_v2.0_scaffold9G04942 Striga asiatica HOM05D001676 ORTHO05D001539 9.9e-06 55.5 57 49.1


User provided reference genes

Program Settings