Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2019.6 1007 100.0
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1926.4 1007 95.6
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1860.1 1006 92.4
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1824.3 1006 90.5
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1820.1 1006 90.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1811.6 1003 90.0
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1797.7 1022 87.9
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1768.8 1005 88.0
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1754.6 1006 87.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1746.1 1007 86.7
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1729.9 1033 84.6
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1702.6 1006 85.0
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1663.7 909 91.5
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1628.6 1008 80.5
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1627.5 1011 80.6
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1627.1 1017 79.5
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1626.3 1008 80.1
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1620.9 1008 80.4
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1619.4 1004 79.7
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1617.4 1007 79.7
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1617.1 1008 80.4
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1615.9 1007 80.0
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1615.5 1007 79.9
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1614.4 1005 79.9
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1612.8 1015 78.8
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1609.0 1007 79.1
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1607.8 1006 79.7
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1606.7 998 79.4
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1603.6 1025 78.0
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1603.6 1008 79.2
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1603.6 1008 79.6
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1599.3 1007 78.4
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1595.5 999 79.2
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1592.0 998 78.7
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1591.2 1015 78.1
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1590.9 999 79.2
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1590.5 1015 78.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1589.7 999 79.0
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1585.5 999 79.0
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1581.6 999 78.8
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1580.5 999 78.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1580.5 1006 77.4
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1576.6 1006 77.3
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1573.1 1009 77.7
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1571.6 989 79.4
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1558.9 1007 76.7
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1553.1 1007 76.9
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1552.7 1007 77.1
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1550.8 1007 77.2
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1548.1 1007 76.7
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1546.2 1007 76.4
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1544.6 1029 75.6
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1543.5 1037 74.4
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1540.0 1005 76.5
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1538.5 1007 76.5
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1536.9 1007 75.7
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1536.5 1007 75.8
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1536.2 1007 75.9
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1535.4 1005 76.5
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1532.3 1008 75.7
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1531.9 1008 75.7
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1530.8 1066 72.8
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1530.0 1013 75.2
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1528.5 1005 75.2
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1527.7 1008 75.6
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1527.7 990 78.3
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1527.7 1004 74.6
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1526.5 1007 75.4
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1525.8 1267 64.9
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1521.9 1008 75.3
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1519.6 1005 75.2
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1519.2 1008 74.8
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1517.7 1005 74.6
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1516.9 1011 74.6
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1516.5 1009 75.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1516.5 1011 74.6
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1516.1 1006 75.0
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1514.2 1006 75.0
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1513.8 1009 74.7
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1511.9 1006 74.8
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1506.5 1007 74.6
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1503.4 1007 74.6
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1500.3 1015 73.6
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1499.2 1017 73.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1499.2 1010 74.1
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1498.4 1006 73.8
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1497.6 1007 74.2
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1495.7 1008 73.9
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1488.8 1011 73.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1488.4 1004 74.9
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1479.5 1019 73.9
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1471.8 986 74.8
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1439.9 1054 69.3
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1437.6 1006 69.9
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1399.8 1004 69.1
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1375.1 856 79.2
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1350.9 1032 67.8
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1322.0 982 67.6
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1281.9 1001 64.7
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1223.4 783 78.7
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1211.1 845 72.0
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1166.4 808 73.3
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1161.7 779 75.5
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1122.5 746 72.9
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1087.8 1114 52.1
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.1e-311 1072.4 765 71.8
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.9e-296 1022.7 674 76.4
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.9e-284 982.2 1084 49.0
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 8.1e-279 964.1 857 62.2
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 3.4e-269 932.2 1005 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 2.2e-268 929.5 1055 47.0
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 9.6e-264 914.1 592 78.5
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-248 864.0 538 78.4
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.4e-230 803.9 445 89.4
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 3.2e-227 792.7 515 75.5
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.2e-216 757.7 607 63.3
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 2.4e-182 643.7 878 42.5
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 6.6e-180 635.6 763 49.4
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.3e-155 553.1 485 59.2
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 6.9e-153 545.8 306 85.9
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.0e-116 425.6 316 65.8
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.3e-98 365.5 205 85.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.9e-95 354.4 318 62.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.4e-91 340.5 220 79.5
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.4e-89 334.7 372 47.8
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 5.4e-89 333.6 216 79.6
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.7e-87 328.6 194 78.9
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 4.3e-86 323.9 256 62.1
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 9.5e-78 296.2 172 82.6
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 6.4e-74 283.5 159 87.4
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 2.3e-68 265.0 152 82.9
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 3.2e-65 254.6 206 61.7
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.6e-55 220.3 143 75.5
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.2e-51 209.5 132 74.2
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.5e-43 182.6 147 63.3
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.6e-43 181.8 121 75.2
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 2.4e-41 175.3 102 84.3
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.2e-41 174.5 193 50.3
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.3e-39 168.7 98 86.7
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.8e-37 161.0 98 76.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 6.9e-36 157.1 111 70.3
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.5e-30 139.4 81 75.3
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 1.6e-29 136.0 65 93.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.1e-29 135.6 78 78.2
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 4.0e-28 131.3 123 56.9
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 9.7e-22 110.2 103 58.3
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.3e-21 109.8 107 47.7
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.8e-21 108.6 78 71.8
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.8e-18 98.2 62 71.0
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 3.8e-18 98.2 105 49.5
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 9.4e-17 93.6 81 59.3
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.6e-16 92.8 558 23.3
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 6.1e-16 90.9 57 73.7
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.4e-15 89.7 52 75.0
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 9.7e-14 83.6 99 47.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.5e-11 76.3 388 21.9
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.0e-11 75.9 45 80.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.6e-11 75.5 69 50.7
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 7.2e-09 67.4 52 65.4


User provided reference genes

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