Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G220000 Glycine max HOM05D000461 ORTHO05D009042 2.5e-133 478.8 241 100.0
Glyma.13G281300 Glycine max HOM05D000461 ORTHO05D009042 3.1e-120 435.3 245 92.2
Phvul.005G086500 Phaseolus vulgaris HOM05D000461 ORTHO05D009042 2.1e-116 422.5 247 87.9
Ca_29614_v3 Cicer arietinum L. HOM05D000461 ORTHO05D009042 5.9e-103 377.9 248 77.0
Lalb_Chr01g0017011 Lupinus albus HOM05D000461 ORTHO05D009042 1.4e-99 366.7 246 77.6
Psat5g246400 Pisum sativum HOM05D000461 ORTHO05D009042 2.9e-97 359.0 246 75.2
Medtr2g080290 Medicago truncatula HOM05D000461 ORTHO05D009042 4.9e-97 358.2 245 75.5
TPR.G32851 Trifolium pratense HOM05D000461 ORTHO05D009042 4.6e-95 351.7 249 75.5
Lalb_Chr25g0286691 Lupinus albus HOM05D000461 ORTHO05D009042 7.5e-90 334.3 245 71.4
Lj3g0027305 Lotus japonicus HOM05D000461 ORTHO05D009042 5.6e-85 318.2 247 72.9
arahy.Tifrunner.gnm1.ann1.20QRXD Arachis hypogaea HOM05D000461 ORTHO05D009042 6.2e-84 314.7 240 72.5
arahy.Tifrunner.gnm1.ann1.IDBP1F Arachis hypogaea HOM05D000461 ORTHO05D009042 2.6e-82 309.3 241 72.2
CiPaw.11G175500 Carya illinoinensis HOM05D000461 ORTHO05D009042 1.1e-80 303.9 248 66.5
Cfa020516 Carpinus fangiana HOM05D000461 ORTHO05D009768 1.9e-80 303.1 222 72.1
QL93p2023_0091 Quercus lobata HOM05D000461 ORTHO05D009042 1.6e-79 300.1 249 65.9
QL08p018706 Quercus lobata HOM05D000461 ORTHO05D009042 2.1e-79 299.7 249 65.9
Prupe.4G189000 Prunus persica HOM05D000461 ORTHO05D009042 4.3e-77 292.0 247 63.2
CSS0025788 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 2.6e-74 282.7 255 60.4
Dinv08335 Davidia involucrata HOM05D000461 ORTHO05D009042 3.4e-74 282.3 256 61.3
Dinv22369 Davidia involucrata HOM05D000461 ORTHO05D009042 3.2e-72 275.8 261 61.7
Manes.03G116000 Manihot esculenta HOM05D000461 ORTHO05D009042 3.5e-71 272.3 255 60.8
TWI39G0508 Tripterygium wilfordii HOM05D000461 ORTHO05D009042 1.7e-70 270.0 247 62.8
CANSAT11G1238 Cannabis sativa HOM05D000461 ORTHO05D009042 1.5e-69 266.9 249 59.8
Ciclev10009303m.g Citrus clementina HOM05D000461 ORTHO05D009042 3.3e-69 265.8 250 60.4
RcHm_v2.0_Chr5g0035191 Rosa chinensis HOM05D000461 ORTHO05D009042 1.6e-68 263.5 247 57.5
Hma1.2p1_1003F.1_g246730 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 6.2e-68 261.5 217 65.4
MD11G1238100 Malus domestica HOM05D000461 ORTHO05D009042 6.2e-68 261.5 248 58.9
Nn1g03924 Nelumbo nucifera HOM05D000461 ORTHO05D009042 5.3e-67 258.5 220 67.3
Cpa.g.sc80.106 Carica papaya HOM05D000461 ORTHO05D009042 1.2e-66 257.3 250 58.4
ClCG10G006570 Citrullus lanatus HOM05D000461 ORTHO05D009042 2.0e-66 256.5 253 57.3
Eucgr.F03352 Eucalyptus grandis HOM05D000461 ORTHO05D009042 2.6e-66 256.1 247 59.1
Potri.001G405800 Populus trichocarpa HOM05D000461 ORTHO05D009042 2.6e-66 256.1 253 58.1
FAN21G1502 Fragaria x ananassa HOM05D000461 ORTHO05D009042 7.6e-66 254.6 243 55.1
Sed0008890 Sechium edule HOM05D000461 ORTHO05D009042 9.9e-66 254.2 246 56.9
FAN11G0265 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.7e-65 253.4 250 56.4
Nitab4.5_0000297g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 2.9e-65 252.7 262 56.5
Solyc07g063530.3 Solanum lycopersicum HOM05D000461 ORTHO05D009042 2.9e-65 252.7 258 54.7
Rhsim04G0018200 Rhododendron simsii HOM05D000461 ORTHO05D009042 4.9e-65 251.9 263 54.0
FAN16G2536 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.4e-64 250.4 248 55.2
VMungo1080G0679 Vigna mungo HOM05D000461 ORTHO05D009042 7.1e-64 248.1 163 78.5
Atru.chr2.2831 Acer truncatum HOM05D000461 ORTHO05D009042 3.5e-63 245.7 253 54.9
Ah.04g164980 Amaranthus hybridus HOM05D000461 ORTHO05D009042 1.0e-62 244.2 215 58.1
Nitab4.5_0002565g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 5.1e-62 241.9 241 58.5
Sabra16G0269500 Salix brachista HOM05D000461 ORTHO05D009042 5.1e-62 241.9 279 51.6
TAR626G1568 Trochodendron aralioides HOM05D000461 ORTHO05D009042 8.7e-62 241.1 254 55.9
PGR031G2091 Punica granatum HOM05D000461 ORTHO05D009042 1.1e-61 240.7 198 67.2
CsaV3_3G006020 Cucumis sativus L. HOM05D000461 ORTHO05D009042 1.9e-61 240.0 255 54.9
MD03G1219800 Malus domestica HOM05D000461 ORTHO05D009042 5.6e-61 238.4 252 54.0
Thecc.07G072900 Theobroma cacao HOM05D000461 ORTHO05D009042 5.6e-61 238.4 253 56.1
Sabra16G0267700 Salix brachista HOM05D000461 ORTHO05D009042 1.6e-60 236.9 281 50.9
Duzib213G0849 Durio zibethinus HOM05D000461 ORTHO05D009042 2.8e-60 236.1 186 67.7
COL.COLO4_09469 Corchorus olitorius HOM05D000461 ORTHO05D009768 3.6e-60 235.7 226 59.7
MSTRG.15210 Avicennia marina HOM05D000461 ORTHO05D009042 8.1e-60 234.6 221 60.6
Cc05_g12620 Coffea canephora HOM05D000461 ORTHO05D009042 2.4e-59 233.0 201 65.2
Sopen07g031710 Solanum pennellii HOM05D000461 ORTHO05D009042 4.5e-58 228.8 169 67.5
Migut.M00872 Erythranthe guttata HOM05D000461 ORTHO05D009042 1.7e-57 226.9 225 57.8
THA.LOC104799911 Tarenaya hassleriana HOM05D000461 ORTHO05D009042 1.7e-57 226.9 234 53.8
BolC7t46022H Brassica oleracea HOM05D000461 ORTHO05D009042 2.2e-57 226.5 237 54.0
BcaC06g32696 Brassica carinata HOM05D000461 ORTHO05D009042 1.4e-56 223.8 234 53.8
Sc03g0009630 Simmondsia chinensis HOM05D000461 ORTHO05D009042 2.4e-56 223.0 253 51.0
GSVIVG01014422001 Vitis vinifera HOM05D000461 ORTHO05D009042 2.4e-56 223.0 148 74.3
A03p57230 Brassica napus HOM05D000461 ORTHO05D009042 5.5e-56 221.9 233 53.6
BraA03t14789Z Brassica rapa HOM05D000461 ORTHO05D009042 5.5e-56 221.9 233 53.6
Thhalv10026109m.g Eutrema salsugineum HOM05D000461 ORTHO05D009042 9.3e-56 221.1 176 61.4
Carub.0007s1348 Capsella rubella HOM05D000461 ORTHO05D009042 1.6e-55 220.3 248 51.2
C07p55420 Brassica napus HOM05D000461 ORTHO05D009042 2.1e-55 219.9 234 53.0
Sp7g25320 Schrenkiella parvula HOM05D000461 ORTHO05D009042 2.1e-55 219.9 233 51.9
Lsat_1_v5_gn_7_106400 Lactuca sativa HOM05D000461 ORTHO05D009042 2.7e-55 219.5 199 58.3
Gohir.A01G068300 Gossypium hirsutum HOM05D000461 ORTHO05D009042 4.6e-55 218.8 257 50.6
Actinidia25643 Actinidia chinensis HOM05D000461 ORTHO05D009042 2.3e-54 216.5 184 60.9
AT4G27390 Arabidopsis thaliana HOM05D000461 ORTHO05D009042 6.7e-54 214.9 234 50.9
CARHR235060 Cardamine hirsuta HOM05D000461 ORTHO05D009042 6.7e-54 214.9 236 51.3
Aqoxy1G02771 Aquilegia oxysepala HOM05D000461 ORTHO05D009042 8.7e-54 214.5 216 56.5
Actinidia18752 Actinidia chinensis HOM05D000461 ORTHO05D009042 2.5e-53 213.0 221 55.7
PSO210G3087 Papaver somniferum HOM05D000461 ORTHO05D009042 2.5e-53 213.0 240 50.8
CDE05G1014 Ceratophyllum demersum HOM05D000461 ORTHO05D009042 4.3e-53 212.2 174 63.8
Gohir.D01G055600 Gossypium hirsutum HOM05D000461 ORTHO05D009042 9.6e-53 211.1 146 68.5
Gorai.002G075700 Gossypium raimondii HOM05D000461 ORTHO05D009042 9.6e-53 211.1 263 48.3
Peaxi162Scf01216g00058 Petunia axillaris HOM05D000461 ORTHO05D009042 9.6e-53 211.1 227 54.2
Aa31LG5G10130 Aethionema arabicum HOM05D000461 ORTHO05D009042 6.2e-52 208.4 188 59.0
AL7G25410 Arabidopsis lyrata HOM05D000461 ORTHO05D009042 2.4e-51 206.5 186 57.5
PSO832G2223 Papaver somniferum HOM05D000461 ORTHO05D009042 4.0e-51 205.7 207 54.6
SGA_v2.0_scaffold73G24312 Striga asiatica HOM05D000461 ORTHO05D009042 4.0e-51 205.7 197 59.9
DCAR_013076 Daucus carota HOM05D000461 ORTHO05D009768 1.2e-50 204.1 182 57.1
vmacro09553 Vaccinium macrocarpon HOM05D000461 ORTHO05D009042 8.4e-49 198.0 350 39.7
Actinidia35273 Actinidia chinensis HOM05D000461 ORTHO05D009042 3.2e-48 196.1 255 47.1
FvH4_3g20860 Fragaria vesca HOM05D000461 ORTHO05D009042 3.2e-48 196.1 197 54.3
Haze_09518 Corylus avellana HOM05D000461 ORTHO05D009042 2.7e-47 193.0 275 46.9
EL10Ac4g08079 Beta vulgaris HOM05D000461 ORTHO05D009042 7.9e-47 191.4 314 39.5
HanXRQChr11g0330871 Helianthus annuus HOM05D000461 ORTHO05D009042 7.9e-47 191.4 172 60.5
Oeu005436.1 Olea europaea HOM05D000461 ORTHO05D009042 1.8e-46 190.3 125 72.8
ECA236G1699 Erigeron canadensis HOM05D003383 ORTHO05D003890 3.1e-43 179.5 142 59.9
AUR62029322 Chenopodium quinoa HOM05D000461 ORTHO05D009042 8.5e-41 171.4 183 53.6
MELO3C016549.2 Cucumis melo HOM05D000461 ORTHO05D009042 2.1e-39 166.8 176 50.6
AUR62015609 Chenopodium quinoa HOM05D000461 ORTHO05D009042 2.7e-39 166.4 183 54.1
Zm00001eb352790 Zea mays HOM05D000461 ORTHO05D009042 2.7e-39 166.4 153 51.6
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 7.9e-39 164.9 125 62.4
Os05g0502500 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D009042 1.8e-38 163.7 171 53.2
Hund28424 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.3e-37 159.5 201 48.8
Hund28429 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.3e-37 159.5 201 48.8
CSS0035681 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 1.3e-36 157.5 174 58.0
RcHm_v2.0_Chr5g0035211 Rosa chinensis HOM05D000461 ORTHO05D009042 2.4e-35 153.3 109 67.9
PGSC0003DMG400019287 Solanum tuberosum HOM05D000461 ORTHO05D009042 4.5e-34 149.1 105 66.7
Mapoly0059s0039 Marchantia polymorpha HOM05D000461 ORTHO05D009042 5.0e-33 145.6 161 45.3
SMO347G0332 Selaginella moellendorffii HOM05D000461 ORTHO05D009042 5.3e-27 125.6 159 41.5
Hma1.2p1_1003F.1_g246740 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 1.2e-26 124.4 82 69.5
Manes.15G162800 Manihot esculenta HOM05D000461 ORTHO05D009042 1.2e-26 124.4 86 68.6
CBR_g3118 Chara braunii HOM05D000461 ORTHO05D009042 3.4e-26 122.9 150 44.0
ATR0693G207 Amborella trichopoda HOM05D000461 ORTHO05D009042 1.0e-22 111.3 92 66.3
Pp3c5_7600 Physcomitrium patens HOM05D000461 ORTHO05D009042 2.6e-21 106.7 162 37.0
unitig_85.g27405 Utricularia gibba HOM05D000461 ORTHO05D009042 6.3e-12 75.5 143 37.1
FAN25G1192 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.2e-07 61.2 54 61.1
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 2.3e-06 57.0 73 43.8
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.3e-06 57.0 57 63.2
VMungo1080G0854 Vigna mungo HOM05D000659 ORTHO05D000505 4.0e-06 56.2 71 45.1
AagrBONN_evm.TU.Sc2ySwM_117.739 Anthoceros agrestis HOM05D000461 ORTHO05D009042 6.8e-06 55.5 72 38.9


User provided reference genes

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