Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.3e-157 559.7 275 100.0
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 3.2e-121 438.7 275 78.9
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 5.0e-114 414.8 275 73.5
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.1e-113 413.7 276 75.4
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.9e-113 412.9 275 73.1
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 3.2e-113 412.1 275 73.8
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 3.6e-112 408.7 286 71.7
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 4.0e-111 405.2 278 73.7
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 4.0e-111 405.2 278 73.7
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 8.8e-111 404.1 278 71.6
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 2.2e-109 399.4 275 72.0
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 3.7e-109 398.7 275 71.6
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 1.2e-107 393.7 238 78.2
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.6e-107 393.3 275 69.8
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.6e-107 393.3 275 69.1
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 2.0e-107 392.9 275 69.1
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 3.5e-107 392.1 275 69.1
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.3e-106 390.2 278 68.3
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 2.3e-106 389.4 275 67.3
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.3e-106 389.4 276 68.8
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.5e-105 386.0 275 68.7
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 4.2e-105 385.2 275 69.5
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.6e-104 383.3 275 68.7
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.6e-104 383.3 275 68.4
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.6e-104 383.3 280 67.5
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 1.0e-103 380.6 275 66.5
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.4e-103 380.2 277 67.5
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.4e-103 380.2 275 66.2
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.8e-103 379.8 277 69.7
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 1.8e-103 379.8 275 66.5
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 5.2e-103 378.3 273 69.6
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 6.8e-103 377.9 275 66.2
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.0e-102 376.3 277 68.2
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 2.0e-102 376.3 277 67.5
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 3.4e-102 375.6 234 75.2
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 3.4e-102 375.6 278 65.8
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.2e-101 372.9 277 65.3
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.7e-101 372.1 273 67.8
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 3.7e-101 372.1 279 65.6
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 4.9e-101 371.7 271 66.8
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 4.9e-101 371.7 273 65.9
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 6.3e-101 371.3 275 66.2
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 6.3e-101 371.3 275 66.5
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.1e-100 370.5 278 66.5
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.4e-100 370.2 284 63.4
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.8e-100 369.8 275 63.6
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.8e-100 369.8 283 62.5
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.4e-100 369.4 275 65.8
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 5.4e-100 368.2 284 62.7
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 7.0e-100 367.9 277 65.7
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.0e-100 367.9 275 65.5
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 9.2e-100 367.5 284 63.0
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.2e-99 367.1 284 62.0
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.2e-99 367.1 276 64.5
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.2e-99 367.1 276 64.5
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 1.2e-99 367.1 280 66.1
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.2e-99 367.1 275 64.7
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 1.2e-99 367.1 252 69.8
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.6e-99 366.7 275 66.2
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 1.6e-99 366.7 260 68.5
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.0e-99 366.3 280 65.0
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 2.0e-99 366.3 284 62.7
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 3.5e-99 365.5 284 61.6
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 4.6e-99 365.2 284 62.3
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 4.6e-99 365.2 284 62.3
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 4.6e-99 365.2 285 62.8
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 4.6e-99 365.2 277 63.5
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 4.6e-99 365.2 234 71.8
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 7.8e-99 364.4 284 62.7
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 7.8e-99 364.4 278 66.9
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 7.8e-99 364.4 277 63.5
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 7.8e-99 364.4 276 64.1
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 7.8e-99 364.4 279 64.2
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.0e-98 364.0 279 66.7
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 1.3e-98 363.6 272 65.1
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 1.7e-98 363.2 277 64.3
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 1.7e-98 363.2 284 62.7
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.7e-98 363.2 277 65.3
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 1.7e-98 363.2 275 65.1
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 1.7e-98 363.2 279 64.2
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.3e-98 362.8 277 65.0
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.3e-98 362.8 284 62.0
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 2.9e-98 362.5 279 63.8
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 5.0e-98 361.7 277 64.6
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 5.0e-98 361.7 282 65.6
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 5.0e-98 361.7 275 62.5
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.1e-97 360.5 286 61.9
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.5e-97 360.1 283 60.4
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.9e-97 359.8 276 62.0
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.5e-97 359.4 276 62.3
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.5e-97 359.4 275 64.4
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 3.3e-97 359.0 283 60.4
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.3e-97 359.0 284 59.2
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 3.3e-97 359.0 273 64.8
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 4.3e-97 358.6 285 61.1
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 4.3e-97 358.6 285 60.0
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 4.3e-97 358.6 285 60.0
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 4.3e-97 358.6 272 64.3
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.6e-97 358.2 285 61.1
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 7.3e-97 357.8 285 60.0
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 9.5e-97 357.5 276 62.0
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 1.6e-96 356.7 286 59.8
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 1.6e-96 356.7 286 59.8
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.6e-96 356.7 277 63.5
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.1e-96 356.3 284 60.2
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 2.8e-96 355.9 285 59.3
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 3.6e-96 355.5 286 59.4
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 3.6e-96 355.5 286 59.4
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 3.6e-96 355.5 280 61.8
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 4.7e-96 355.1 280 62.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 4.7e-96 355.1 233 71.7
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 6.1e-96 354.8 284 59.2
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 6.1e-96 354.8 280 61.4
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 8.0e-96 354.4 278 64.4
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 8.0e-96 354.4 275 63.3
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.8e-95 353.2 277 62.8
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 6.8e-95 351.3 282 63.8
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.5e-94 350.1 284 58.8
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 2.6e-94 349.4 284 58.8
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 3.4e-94 349.0 275 61.8
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 3.4e-94 349.0 276 62.7
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 1.7e-93 346.7 281 63.0
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 4.9e-93 345.1 235 72.3
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.1e-92 344.0 275 61.1
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 2.4e-92 342.8 275 60.0
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 5.4e-92 341.7 262 63.0
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 7.0e-92 341.3 249 66.3
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 2.0e-91 339.7 282 59.9
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 2.0e-91 339.7 305 56.1
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 2.3e-90 336.3 279 60.2
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.0e-90 335.9 276 61.2
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 6.6e-90 334.7 277 61.7
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.3e-89 332.4 294 57.8
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 7.3e-89 331.3 275 59.6
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 8.1e-88 327.8 276 58.7
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.1e-87 327.4 274 57.7
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.5e-86 323.6 275 58.9
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.4e-86 322.0 236 68.2
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.1e-84 317.4 277 56.0
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.3e-82 309.7 275 58.9
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.5e-81 307.0 275 58.5
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 1.9e-81 306.6 236 60.6
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.8e-79 300.1 248 59.3
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 2.2e-77 293.1 285 53.7
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.7e-77 292.4 242 61.6
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.9e-76 290.0 181 74.0
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 7.1e-76 288.1 263 53.6
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 9.2e-76 287.7 276 53.6
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 2.5e-73 279.6 260 52.3
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 4.4e-70 268.9 198 64.1
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 6.6e-66 255.0 235 49.8
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 6.6e-66 255.0 212 57.5
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 5.4e-60 235.3 186 60.8
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 5.1e-58 228.8 281 41.6
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 6.2e-56 221.9 158 70.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 2.7e-51 206.5 157 64.3
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 4.6e-51 205.7 157 63.1
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.4e-47 193.4 244 45.9
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 9.0e-47 191.4 205 49.3
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 9.0e-47 191.4 157 59.9
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 2.3e-42 176.8 235 39.1
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.0e-42 176.4 175 53.7
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 3.8e-37 159.5 137 57.7
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 5.0e-37 159.1 137 57.7
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 5.0e-37 159.1 137 57.7
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 2.2e-24 117.1 115 50.4
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-22 110.9 143 40.6
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.2e-16 90.5 74 54.1
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.4e-15 87.8 183 32.8


User provided reference genes

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