Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G217800 Glycine max HOM05D008268 ORTHO05D010144 2.0e-155 552.4 276 100.0
Glyma.13G282800 Glycine max HOM05D008268 ORTHO05D010144 7.0e-124 447.6 288 84.0
Phvul.005G087800 Phaseolus vulgaris HOM05D008268 ORTHO05D010144 9.5e-89 330.9 283 68.9
VMungo1080G0851 Vigna mungo HOM05D008268 ORTHO05D010144 5.2e-87 325.1 283 71.0
Lalb_Chr25g0286831 Lupinus albus HOM05D008268 ORTHO05D010144 2.4e-47 193.4 270 50.0
Lalb_Chr20g0110041 Lupinus albus HOM05D008268 ORTHO05D010144 6.5e-29 132.1 134 57.5
TPR.G32855 Trifolium pratense HOM05D008268 ORTHO05D010144 7.2e-28 128.6 234 43.2
CiPaw.11G178900 Carya illinoinensis HOM05D008268 ORTHO05D010144 2.3e-26 123.6 245 40.4
arahy.Tifrunner.gnm1.ann1.Y898LB Arachis hypogaea HOM05D008268 ORTHO05D010144 1.5e-25 120.9 244 41.8
arahy.Tifrunner.gnm1.ann1.R70FHG Arachis hypogaea HOM05D008268 ORTHO05D010144 9.7e-25 118.2 231 41.1
Medtr2g081240 Medicago truncatula HOM05D008268 ORTHO05D010144 1.1e-23 114.8 256 41.4
Thecc.07G068700 Theobroma cacao HOM05D008268 ORTHO05D010144 1.2e-22 111.3 241 39.8
Cfa020486 Carpinus fangiana HOM05D008268 ORTHO05D010144 1.6e-22 110.9 261 39.1
QL08p017136 Quercus lobata HOM05D008268 ORTHO05D010144 3.5e-22 109.8 248 40.7
Psat5g247560 Pisum sativum HOM05D008268 ORTHO05D010144 4.5e-22 109.4 269 37.5
Ca_01792_v3 Cicer arietinum L. HOM05D008268 ORTHO05D010144 1.3e-21 107.8 100 65.0
Gorai.002G077500 Gossypium raimondii HOM05D008268 ORTHO05D010144 1.3e-21 107.8 252 37.3
Gohir.D01G057100 Gossypium hirsutum HOM05D008268 ORTHO05D010144 1.7e-21 107.5 252 37.3
Gohir.A01G069900 Gossypium hirsutum HOM05D008268 ORTHO05D010144 2.2e-21 107.1 209 40.7
Duzib170G0253 Durio zibethinus HOM05D008268 ORTHO05D010144 3.6e-19 99.8 204 40.2
Manes.15G081401 Manihot esculenta HOM05D008268 ORTHO05D010144 3.6e-19 99.8 186 40.9
Prupe.4G192500 Prunus persica HOM05D008268 ORTHO05D010144 7.5e-17 92.0 294 33.0
Duzib213G0412 Durio zibethinus HOM05D008268 ORTHO05D010144 9.7e-17 91.7 183 39.3
Dinv08361 Davidia involucrata HOM05D008268 ORTHO05D010144 4.8e-16 89.4 178 39.3
MD11G1234600 Malus domestica HOM05D008268 ORTHO05D010144 4.8e-16 89.4 282 31.6
Lj3g0025864 Lotus japonicus HOM05D008268 ORTHO05D010144 1.4e-15 87.8 248 34.7
Dinv22349 Davidia involucrata HOM05D008268 ORTHO05D010144 4.1e-15 86.3 199 38.7
Cpa.g.sc12.16 Carica papaya HOM05D008268 ORTHO05D010144 3.8e-13 79.7 265 29.8
Atru.chr2.2941 Acer truncatum HOM05D008268 ORTHO05D010144 5.5e-12 75.9 258 35.3
COL.COLO4_09500 Corchorus olitorius HOM05D008268 ORTHO05D010144 6.1e-11 72.4 94 50.0
Sabra16G0271800 Salix brachista HOM05D019858 ORTHO05D010144 1.4e-10 71.2 101 47.5
Sabra16G0276800 Salix brachista HOM05D019858 ORTHO05D010144 1.4e-10 71.2 101 47.5
Potri.001G409000 Populus trichocarpa HOM05D019858 ORTHO05D010144 3.0e-10 70.1 112 43.8
Oeu061273.1 Olea europaea HOM05D008268 ORTHO05D010144 4.0e-10 69.7 183 35.0
CANSAT11G1352 Cannabis sativa HOM05D008268 ORTHO05D010144 5.2e-10 69.3 252 30.2
MD03G1216800 Malus domestica HOM05D008268 ORTHO05D010144 6.8e-10 68.9 212 33.5
CSS0042196 Camellia sinensis var. sinensis HOM05D008268 ORTHO05D010144 8.8e-10 68.6 192 37.0
Nitab4.5_0001252g0050 Nicotiana tabacum HOM05D015394 ORTHO05D017774 8.8e-10 68.6 297 29.0
CSS0041304 Camellia sinensis var. sinensis HOM05D008268 ORTHO05D010144 1.2e-09 68.2 193 36.8
TAR626G0659 Trochodendron aralioides HOM05D008268 ORTHO05D010144 1.5e-09 67.8 183 32.2
Potri.011G125600 Populus trichocarpa HOM05D019858 ORTHO05D010144 7.5e-09 65.5 115 43.5
Haze_09553 Corylus avellana HOM05D008268 ORTHO05D010144 1.3e-08 64.7 238 32.8
Nitab4.5_0000297g0210 Nicotiana tabacum HOM05D015394 ORTHO05D017774 1.8e-07 60.8 205 31.2
TWI38G2068 Tripterygium wilfordii HOM05D008268 ORTHO05D010144 1.8e-07 60.8 216 33.3
Nn1g06831 Nelumbo nucifera HOM05D008268 ORTHO05D010144 5.4e-07 59.3 197 29.4
RcHm_v2.0_Chr6g0255571 Rosa chinensis HOM05D014484 ORTHO05D017021 7.0e-07 58.9 217 30.4
Peaxi162Scf00000g07812 Petunia axillaris HOM05D015394 ORTHO05D017774 9.1e-07 58.5 186 32.3
RhsimUnG0257100 Rhododendron simsii HOM05D047612 ORTHO05D010144 9.1e-07 58.5 245 30.2
Eucgr.F01064 Eucalyptus grandis HOM05D008268 ORTHO05D010144 2.0e-06 57.4 107 39.3
RhsimUnG0172800 Rhododendron simsii HOM05D047612 ORTHO05D010144 3.5e-06 56.6 241 29.9
Sabra11G0111900 Salix brachista HOM05D019858 ORTHO05D010144 3.5e-06 56.6 104 42.3
SHI51816 Sapria himalayana HOM05D008268 ORTHO05D010144 4.5e-06 56.2 222 32.0


User provided reference genes

Program Settings