Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 3.4e-147 525.0 275 100.0
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.7e-114 416.4 287 79.4
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 3.2e-68 262.7 288 56.9
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.9e-60 236.9 315 49.8
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 7.9e-51 204.9 319 46.1
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 4.8e-48 195.7 329 45.9
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 6.2e-48 195.3 331 44.4
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 1.1e-47 194.5 329 44.7
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 4.5e-46 189.1 330 41.5
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 5.8e-46 188.7 323 43.7
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.0e-45 188.0 320 41.9
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.0e-45 188.0 320 41.9
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 4.9e-45 185.7 323 44.0
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 6.5e-45 185.3 326 43.6
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 1.1e-44 184.5 323 41.5
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 3.2e-44 183.0 332 41.6
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 6.0e-43 178.7 324 42.0
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 2.8e-40 169.9 319 41.4
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 4.8e-40 169.1 315 41.9
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.2e-37 160.2 267 41.9
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.9e-37 159.8 279 40.1
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 1.4e-36 157.5 261 42.5
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 2.5e-36 156.8 342 37.7
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 2.1e-35 153.7 333 36.6
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 6.1e-35 152.1 310 39.0
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 5.1e-34 149.1 339 38.1
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 6.7e-34 148.7 295 39.0
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 1.1e-33 147.9 325 36.3
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.1e-33 147.9 258 40.3
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 3.3e-33 146.4 321 40.2
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 4.3e-33 146.0 264 40.2
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.1e-31 141.4 318 39.0
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.4e-31 141.0 328 35.4
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.8e-31 140.6 289 38.1
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.4e-31 140.2 262 37.4
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 4.1e-31 139.4 216 45.4
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 9.0e-31 138.3 335 35.8
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.6e-30 136.7 341 34.9
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 3.4e-30 136.3 332 34.9
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 5.9e-30 135.6 287 37.6
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 5.9e-30 135.6 279 36.2
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.3e-29 134.4 319 37.6
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.7e-29 134.0 330 36.1
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 3.8e-29 132.9 286 38.5
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 8.5e-29 131.7 330 34.5
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.9e-28 130.6 349 33.0
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 3.2e-28 129.8 317 35.0
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.5e-28 129.0 330 34.8
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.5e-28 129.0 348 33.9
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 7.2e-28 128.6 351 35.0
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 9.4e-28 128.3 280 37.1
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.2e-27 127.9 336 35.4
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 2.7e-27 126.7 255 37.3
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 3.6e-27 126.3 277 38.3
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 3.6e-27 126.3 298 36.9
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 4.6e-27 125.9 356 34.0
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 4.6e-27 125.9 311 36.0
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 4.6e-27 125.9 325 33.5
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 6.1e-27 125.6 266 35.0
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 7.9e-27 125.2 254 35.4
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.0e-26 124.8 345 33.6
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.8e-26 124.0 320 35.0
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 1.8e-26 124.0 280 36.1
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.8e-26 124.0 301 34.9
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.8e-26 124.0 267 34.5
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.3e-26 123.6 287 37.6
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.3e-26 123.6 330 33.6
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 3.0e-26 123.2 321 34.3
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 5.1e-26 122.5 330 33.6
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 5.1e-26 122.5 253 36.0
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 8.8e-26 121.7 256 36.7
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 8.8e-26 121.7 253 36.4
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.5e-25 120.9 328 32.9
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 1.5e-25 120.9 279 37.6
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 2.0e-25 120.6 255 35.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.5e-25 120.2 324 35.5
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 2.5e-25 120.2 323 32.2
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 2.5e-25 120.2 287 31.7
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.5e-25 120.2 328 32.9
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 3.3e-25 119.8 324 33.3
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 4.3e-25 119.4 255 36.5
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.7e-25 119.0 288 36.1
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 5.7e-25 119.0 343 34.7
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 7.4e-25 118.6 328 35.1
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 7.4e-25 118.6 349 33.8
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.7e-25 118.2 322 34.2
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 9.7e-25 118.2 330 33.0
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 9.7e-25 118.2 232 40.1
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.3e-24 117.9 322 34.5
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.8e-24 116.7 328 34.5
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 3.7e-24 116.3 335 32.8
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 3.7e-24 116.3 324 34.0
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.8e-24 115.9 256 37.5
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 8.2e-24 115.2 318 32.4
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.1e-23 114.8 284 38.4
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 1.1e-23 114.8 321 32.7
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.8e-23 114.0 277 33.6
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 3.1e-23 113.2 228 36.4
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 5.3e-23 112.5 208 39.9
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 9.1e-23 111.7 278 34.2
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 1.2e-22 111.3 318 31.8
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.5e-22 110.9 276 33.0
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 4.5e-22 109.4 324 33.3
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 5.9e-22 109.0 271 33.2
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 7.7e-22 108.6 315 32.7
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.3e-21 107.8 244 34.0
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 2.9e-21 106.7 136 44.1
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 5.0e-21 105.9 184 37.5
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 6.5e-21 105.5 258 34.1
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 8.5e-21 105.1 304 30.9
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 8.5e-21 105.1 267 35.2
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.9e-20 104.0 266 33.1
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.2e-20 103.2 237 37.6
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.2e-20 102.8 311 34.4
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 7.2e-20 102.1 305 30.5
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 9.4e-20 101.7 265 33.2
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.7e-19 100.1 330 31.8
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 4.7e-19 99.4 278 34.5
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.0e-18 98.2 353 28.9
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 8.8e-18 95.1 297 32.3
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 1.1e-17 94.7 216 34.3
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.5e-17 94.4 351 29.9
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 2.0e-17 94.0 288 30.2
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 2.6e-17 93.6 318 31.1
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 9.7e-17 91.7 274 32.1
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 1.3e-16 91.3 277 31.0
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.7e-16 90.9 74 63.5
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 2.2e-16 90.5 334 29.0
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 2.8e-16 90.1 232 28.4
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 3.7e-16 89.7 316 29.7
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 4.8e-16 89.4 262 30.5
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 6.3e-16 89.0 261 30.7
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 6.3e-16 89.0 261 33.0
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.4e-15 87.8 249 30.5
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.8e-15 87.4 261 31.8
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 2.4e-15 87.0 335 28.4
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 7.0e-15 85.5 256 28.5
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 9.1e-15 85.1 233 27.9
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 1.2e-14 84.7 261 31.4
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.6e-14 84.3 261 30.7
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.6e-14 84.3 256 30.9
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 1.6e-14 84.3 187 36.4
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.0e-14 84.0 222 35.6
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.5e-14 82.8 226 35.0
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 2.9e-13 80.1 273 28.2
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 3.8e-13 79.7 221 32.1
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.8e-13 79.7 230 35.2
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 8.5e-13 78.6 269 29.0
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.5e-12 77.8 226 31.0
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 4.2e-12 76.3 155 32.9
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 9.4e-12 75.1 225 28.4
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 2.7e-11 73.6 123 40.7
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 6.1e-11 72.4 202 30.7
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 6.1e-11 72.4 281 25.6
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.0e-10 71.6 353 25.5
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 1.4e-10 71.2 326 25.2
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 1.8e-10 70.9 48 66.7
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 3.0e-10 70.1 186 38.7
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 5.2e-10 69.3 194 30.9
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.1e-09 68.2 116 40.5
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.5e-09 67.8 229 29.7
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 3.7e-08 63.2 160 33.1
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.4e-07 61.2 279 24.0


User provided reference genes

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