Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 5.2e-111 404.4 213 100.0
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 2.1e-104 382.5 214 95.8
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 1.7e-93 346.3 214 87.4
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 6.0e-91 337.8 214 86.4
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 3.7e-80 302.0 218 77.5
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 1.9e-76 289.7 218 75.2
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 2.7e-75 285.8 179 84.4
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 2.8e-72 275.8 217 71.9
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 4.8e-72 275.0 218 71.6
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 1.8e-71 273.1 216 71.3
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 1.0e-69 267.3 217 71.0
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 1.7e-69 266.5 225 68.0
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 2.7e-67 259.2 186 76.3
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 3.6e-67 258.8 218 68.8
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 3.6e-67 258.8 218 68.8
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 3.6e-67 258.8 213 68.1
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 7.9e-67 257.7 187 74.9
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 3.0e-66 255.8 222 67.1
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 3.3e-65 252.3 212 68.9
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.3e-65 252.3 212 68.9
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 3.3e-65 252.3 182 76.4
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 4.3e-65 251.9 186 74.2
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 7.4e-65 251.1 186 72.6
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 9.7e-65 250.8 242 63.2
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.3e-64 250.4 198 71.2
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 1.3e-64 250.4 212 67.5
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.7e-64 250.0 218 68.3
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.7e-64 250.0 218 67.9
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.7e-64 250.0 218 68.3
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 2.2e-64 249.6 219 67.6
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.2e-64 249.6 212 67.0
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 3.7e-64 248.8 230 64.8
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.2e-64 247.7 212 68.4
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 1.1e-63 247.3 230 64.3
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 5.3e-63 245.0 226 67.7
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.2e-62 243.8 213 67.6
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 1.5e-62 243.4 228 64.9
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 2.0e-62 243.0 216 66.2
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 5.9e-62 241.5 213 66.2
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 7.7e-62 241.1 199 69.8
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 2.2e-61 239.6 202 67.8
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 2.9e-61 239.2 204 65.7
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 3.8e-61 238.8 217 64.5
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 3.8e-61 238.8 225 64.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 3.8e-61 238.8 188 71.3
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 6.5e-61 238.0 178 73.6
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 6.5e-61 238.0 188 71.3
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 8.5e-61 237.7 217 62.2
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 1.4e-60 236.9 223 62.8
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 1.9e-60 236.5 182 71.4
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 2.5e-60 236.1 178 71.9
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 2.5e-60 236.1 222 62.6
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 3.2e-60 235.7 178 71.9
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 5.5e-60 235.0 150 82.0
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 5.5e-60 235.0 219 63.9
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 7.2e-60 234.6 178 71.9
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 7.2e-60 234.6 178 71.9
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 7.2e-60 234.6 178 71.9
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 7.2e-60 234.6 179 72.6
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 9.4e-60 234.2 209 66.0
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.2e-59 233.8 214 64.0
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 2.7e-59 232.6 208 64.9
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 3.6e-59 232.3 179 72.6
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 3.6e-59 232.3 228 64.0
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 3.6e-59 232.3 218 63.8
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 3.6e-59 232.3 190 71.1
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 6.1e-59 231.5 201 66.2
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 6.1e-59 231.5 197 67.5
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 1.4e-58 230.3 179 72.1
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 1.4e-58 230.3 207 63.3
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 2.3e-58 229.6 162 77.2
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 3.9e-58 228.8 212 65.1
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 6.7e-58 228.0 178 72.5
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 1.5e-57 226.9 165 73.3
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.5e-57 226.9 221 60.6
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 2.0e-57 226.5 191 69.1
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 9.7e-57 224.2 195 66.7
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 9.7e-57 224.2 194 66.5
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 4.8e-56 221.9 156 78.8
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 1.4e-55 220.3 150 79.3
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.4e-55 219.5 181 68.0
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 5.3e-55 218.4 171 71.3
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 4.5e-54 215.3 177 68.4
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 1.4e-50 203.8 195 59.5
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 4.4e-49 198.7 178 65.2
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 1.3e-48 197.2 178 65.2
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.0e-46 189.9 198 57.6
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 5.9e-46 188.3 163 66.3
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 1.7e-45 186.8 226 55.8
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 5.5e-44 181.8 161 60.9
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 5.5e-44 181.8 151 65.6
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.8e-39 166.8 160 60.6
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 2.4e-39 166.4 118 74.6
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 4.5e-38 162.2 159 60.4
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 1.7e-37 160.2 107 81.3
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 2.4e-31 139.8 102 70.6
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.5e-30 136.0 82 89.0
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 2.3e-29 133.3 82 87.8
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.6e-25 119.8 108 58.3
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.3e-21 107.5 73 78.1
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.5e-20 104.0 79 65.8
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 2.5e-20 103.2 88 61.4
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 5.6e-20 102.1 129 45.7
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 4.4e-17 92.4 103 56.3
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 4.9e-16 89.0 59 83.1
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 1.2e-11 74.3 111 38.7
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 4.0e-10 69.3 46 80.4
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.0e-10 69.3 46 80.4
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 8.3e-08 61.6 98 36.7
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 3.2e-07 59.7 103 39.8
AagrBONN_evm.TU.Sc2ySwM_117.1655 Anthoceros agrestis HOM05D007184 ORTHO05D008987 4.6e-06 55.8 91 37.4


User provided reference genes

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