Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G207700 Glycine max HOM05D007603 ORTHO05D009604 3.0e-100 368.6 201 100.0
Glyma.13G293400 Glycine max HOM05D007603 ORTHO05D009604 9.7e-75 283.9 206 82.5
Phvul.005G099400 Phaseolus vulgaris HOM05D007603 ORTHO05D009604 4.5e-56 221.9 203 69.0
VMungo1080G0021 Vigna mungo HOM05D007603 ORTHO05D009604 2.9e-55 219.2 202 68.3
Lj3g0007744 Lotus japonicus HOM05D007603 ORTHO05D009604 1.9e-41 173.3 210 61.4
Medtr2g090770 Medicago truncatula HOM05D007603 ORTHO05D009604 1.3e-39 167.2 208 57.2
Psat5g274200 Pisum sativum HOM05D007603 ORTHO05D009604 2.8e-37 159.5 207 56.0
arahy.Tifrunner.gnm1.ann1.76DKB4 Arachis hypogaea HOM05D007603 ORTHO05D009604 1.2e-35 154.1 231 48.5
arahy.Tifrunner.gnm1.ann1.M59RYT Arachis hypogaea HOM05D007603 ORTHO05D009604 2.6e-35 152.9 231 48.1
TPR.G6485 Trifolium pratense HOM05D007603 ORTHO05D009604 2.2e-34 149.8 213 55.4
Lalb_Chr14g0367241 Lupinus albus HOM05D007603 ORTHO05D009604 5.4e-33 145.2 228 49.1
CiPaw.03G182900 Carya illinoinensis HOM05D007603 ORTHO05D009604 2.5e-30 136.3 226 47.8
Ciclev10017455m.g Citrus clementina HOM05D007603 ORTHO05D009604 1.1e-28 131.0 236 47.5
Thecc.02G187900 Theobroma cacao HOM05D007603 ORTHO05D009604 1.4e-28 130.6 240 44.2
Prupe.3G128600 Prunus persica HOM05D007603 ORTHO05D009604 3.1e-28 129.4 219 47.0
Haze_13265 Corylus avellana HOM05D007603 ORTHO05D009604 6.8e-28 128.3 230 48.7
ClCG02G002280 Citrullus lanatus HOM05D007603 ORTHO05D009604 5.8e-27 125.2 233 45.9
Manes.13G141000 Manihot esculenta HOM05D007603 ORTHO05D009604 5.8e-27 125.2 245 42.4
MELO3C018861.2 Cucumis melo HOM05D007603 ORTHO05D009604 7.6e-27 124.8 235 41.3
FAN02G2478 Fragaria x ananassa HOM05D007603 ORTHO05D009604 2.2e-26 123.2 218 47.7
Actinidia10989 Actinidia chinensis HOM05D007603 ORTHO05D009604 9.2e-25 117.9 185 51.4
QL08p040785 Quercus lobata HOM05D007603 ORTHO05D009604 9.2e-25 117.9 232 47.0
TWI23G0636 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 9.2e-25 117.9 231 49.8
Sed0002279 Sechium edule HOM05D007603 ORTHO05D009604 1.2e-24 117.5 226 42.9
Dinv06842 Davidia involucrata HOM05D007603 ORTHO05D009604 2.7e-24 116.3 227 48.0
Potri.013G072200 Populus trichocarpa HOM05D007603 ORTHO05D009604 1.3e-23 114.0 245 40.0
Sabra13G0062200 Salix brachista HOM05D007603 ORTHO05D009604 2.3e-23 113.2 242 40.1
Potri.013G120700 Populus trichocarpa HOM05D007603 ORTHO05D009604 3.0e-23 112.8 235 42.6
Sabra13G0102000 Salix brachista HOM05D007603 ORTHO05D009604 3.0e-23 112.8 241 41.5
Sed0026242 Sechium edule HOM05D007603 ORTHO05D009604 1.9e-22 110.2 220 43.6
Atru.chr6.2855 Acer truncatum HOM05D007603 ORTHO05D009604 3.3e-22 109.4 238 40.8
Solyc07g150145.1 Solanum lycopersicum HOM05D007603 ORTHO05D009604 4.3e-22 109.0 241 42.3
PGR042G1843 Punica granatum HOM05D007603 ORTHO05D009604 7.3e-22 108.2 214 43.5
Hma1.2p1_0002F.1_g002370 Hydrangea macrophylla HOM05D007603 ORTHO05D009604 9.6e-22 107.8 231 44.2
SalBow7G0820 Salvia bowleyana HOM05D007603 ORTHO05D009604 1.2e-21 107.5 215 44.7
CSS0037684 Camellia sinensis var. sinensis HOM05D007603 ORTHO05D009604 3.6e-21 105.9 226 43.8
PGSC0003DMG400009384 Solanum tuberosum HOM05D007603 ORTHO05D009604 4.7e-21 105.5 232 45.3
vmacro12353 Vaccinium macrocarpon HOM05D007603 ORTHO05D009604 4.7e-21 105.5 202 49.5
Dinv39835 Davidia involucrata HOM05D007603 ORTHO05D009604 6.2e-21 105.1 221 45.7
Gohir.A03G153900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 3.1e-20 102.8 223 42.6
Nitab4.5_0002629g0010 Nicotiana tabacum HOM05D007603 ORTHO05D009604 9.0e-20 101.3 228 43.4
MSTRG.14321 Avicennia marina HOM05D007603 ORTHO05D009604 1.5e-19 100.5 204 40.7
Gohir.D02G176900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 3.4e-19 99.4 225 42.7
Actinidia11119 Actinidia chinensis HOM05D007603 ORTHO05D009604 5.8e-19 98.6 205 46.3
DCAR_013048 Daucus carota HOM05D007603 ORTHO05D009604 5.8e-19 98.6 212 40.6
TWI14G0603 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 9.9e-19 97.8 230 44.3
Oeu016901.1 Olea europaea HOM05D007603 ORTHO05D009604 1.7e-18 97.1 240 37.1
Carub.0005s2128 Capsella rubella HOM05D007603 ORTHO05D009604 2.2e-18 96.7 220 39.5
A07p22220 Brassica napus HOM05D007603 ORTHO05D009604 4.9e-18 95.5 217 39.6
Lsat_1_v5_gn_8_137160 Lactuca sativa HOM05D007603 ORTHO05D009604 1.1e-17 94.4 212 42.0
BcaC08g44692 Brassica carinata HOM05D007603 ORTHO05D009604 1.4e-17 94.0 217 40.1
C06p22280 Brassica napus HOM05D007603 ORTHO05D009604 1.4e-17 94.0 217 40.1
BolC6t37414H Brassica oleracea HOM05D007603 ORTHO05D009604 1.4e-17 94.0 217 40.1
Oeu036085.1 Olea europaea HOM05D007603 ORTHO05D009604 1.4e-17 94.0 242 37.2
THA.LOC104825256 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 1.4e-17 94.0 227 37.4
BraA07t29901Z Brassica rapa HOM05D007603 ORTHO05D009604 1.9e-17 93.6 207 39.6
Thhalv10010720m.g Eutrema salsugineum HOM05D007603 ORTHO05D009604 1.9e-17 93.6 223 38.6
Aa31sc35G40 Aethionema arabicum HOM05D007603 ORTHO05D009604 2.4e-17 93.2 238 37.4
HanXRQChr08g0231781 Helianthus annuus HOM05D007603 ORTHO05D009604 2.1e-16 90.1 195 42.6
BcaB02g07727 Brassica carinata HOM05D007603 ORTHO05D009604 1.0e-15 87.8 219 38.4
Cc05_g07840 Coffea canephora HOM05D007603 ORTHO05D009604 1.3e-15 87.4 173 42.8
Aqoxy1G02256 Aquilegia oxysepala HOM05D007603 ORTHO05D009604 2.3e-15 86.7 244 37.7
FAN09G3062 Fragaria x ananassa HOM05D007603 ORTHO05D009604 6.6e-15 85.1 127 50.4
CDE10G1214 Ceratophyllum demersum HOM05D007603 ORTHO05D009604 1.1e-14 84.3 154 42.2
AL5G35760 Arabidopsis lyrata HOM05D007603 ORTHO05D009604 1.5e-14 84.0 227 40.1
CDE10G0532 Ceratophyllum demersum HOM05D007603 ORTHO05D009604 7.3e-14 81.6 148 39.2
Nitab4.5_0006973g0020 Nicotiana tabacum HOM05D007603 ORTHO05D009604 1.3e-13 80.9 175 45.1
Sp5g07770 Schrenkiella parvula HOM05D007603 ORTHO05D009604 1.3e-13 80.9 235 35.3
AT3G54680 Arabidopsis thaliana HOM05D007603 ORTHO05D009604 2.1e-13 80.1 225 36.4
Cpa.g.sc50.10 Carica papaya HOM05D007603 ORTHO05D009604 2.1e-13 80.1 270 34.1
CAN.G1543.2 Capsicum annuum HOM05D007603 ORTHO05D009604 4.8e-13 79.0 158 39.2
unitig_749.g13962 Utricularia gibba HOM05D007603 ORTHO05D009604 1.8e-12 77.0 207 34.3
Hund01003 Selenicereus undatus HOM05D007603 ORTHO05D009604 3.1e-12 76.3 252 33.3
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 3.1e-12 76.3 206 44.7
Sopen07g027470 Solanum pennellii HOM05D007603 ORTHO05D009604 4.0e-12 75.9 236 39.4
FAN14G3046 Fragaria x ananassa HOM05D007603 ORTHO05D016291 5.3e-12 75.5 194 38.1
THA.LOC104823514 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 1.2e-11 74.3 213 34.7
CsaV3_7G003160 Cucumis sativus L. HOM05D007603 ORTHO05D009604 1.5e-11 73.9 172 36.6
CARHR164600 Cardamine hirsuta HOM05D007603 ORTHO05D009604 7.6e-11 71.6 219 40.6
BcaB01g00169 Brassica carinata HOM05D007603 ORTHO05D009604 9.9e-11 71.2 221 41.6
Nn1g04268 Nelumbo nucifera HOM05D007603 ORTHO05D009604 1.7e-10 70.5 250 40.0
PSO541G0270 Papaver somniferum HOM05D007603 ORTHO05D009604 1.7e-10 70.5 240 33.3
TAR624G0387 Trochodendron aralioides HOM05D007603 ORTHO05D009604 1.7e-10 70.5 159 47.2
AUR62036075 Chenopodium quinoa HOM05D007603 ORTHO05D009604 9.3e-09 64.7 125 43.2
A09p47630 Brassica napus HOM05D007603 ORTHO05D009604 3.5e-08 62.8 215 40.9
BcaC07g39795 Brassica carinata HOM05D007603 ORTHO05D009604 1.3e-07 60.8 213 39.9
Hund07856 Selenicereus undatus HOM05D007603 ORTHO05D009604 1.3e-07 60.8 92 51.1
C08p29830 Brassica napus HOM05D007603 ORTHO05D009604 3.9e-07 59.3 213 39.9
AUR62043430 Chenopodium quinoa HOM05D007603 ORTHO05D009604 4.3e-06 55.8 113 44.2
PSO675G7067 Papaver somniferum HOM05D007603 ORTHO05D009604 5.6e-06 55.5 241 30.7


User provided reference genes

Program Settings