Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G204032 Glycine max HOM05D006713 ORTHO05D008601 3.2e-53 211.5 106 100.0
Glyma.13G297500 Glycine max HOM05D006713 ORTHO05D008601 1.7e-49 199.1 106 93.4
arahy.Tifrunner.gnm1.ann1.FW5TAU Arachis hypogaea HOM05D006713 ORTHO05D008601 6.5e-46 187.2 106 86.8
Ca_01502_v3 Cicer arietinum L. HOM05D006713 ORTHO05D008601 2.5e-45 185.3 104 85.6
arahy.Tifrunner.gnm1.ann1.Q4ZJSX Arachis hypogaea HOM05D006713 ORTHO05D008601 3.2e-45 184.9 106 85.8
VMungo1080G0618 Vigna mungo HOM05D006713 ORTHO05D008601 3.2e-45 184.9 106 84.9
Lalb_Chr14g0366891 Lupinus albus HOM05D006713 ORTHO05D008601 1.2e-44 183.0 103 85.4
Lj3g0026133 Lotus japonicus HOM05D006713 ORTHO05D008601 2.8e-44 181.8 102 87.3
Psat5g271440 Pisum sativum HOM05D006713 ORTHO05D008601 1.2e-42 176.4 105 83.8
Medtr2g090335 Medicago truncatula HOM05D006713 ORTHO05D008601 1.1e-40 169.9 98 83.7
Atru.chr6.3001 Acer truncatum HOM05D006713 ORTHO05D008601 5.4e-40 167.5 101 81.2
Thhalv10007899m.g Eutrema salsugineum HOM05D006713 ORTHO05D008601 2.9e-38 161.8 102 76.5
TWI18G1058 Tripterygium wilfordii HOM05D006713 ORTHO05D008601 2.9e-38 161.8 101 79.2
BcaC07g42238 Brassica carinata HOM05D006713 ORTHO05D008601 5.0e-38 161.0 102 77.5
A09p68250 Brassica napus HOM05D006713 ORTHO05D008601 5.0e-38 161.0 102 77.5
BolC8t52795H Brassica oleracea HOM05D006713 ORTHO05D008601 5.0e-38 161.0 102 77.5
BraA09t42160Z Brassica rapa HOM05D006713 ORTHO05D008601 5.0e-38 161.0 102 77.5
Sp1g02570 Schrenkiella parvula HOM05D006713 ORTHO05D008601 5.0e-38 161.0 102 77.5
MD17G1241000 Malus domestica HOM05D006713 ORTHO05D008601 1.5e-37 159.5 102 76.5
Ciclev10015547m.g Citrus clementina HOM05D006713 ORTHO05D008601 1.9e-37 159.1 101 76.2
Haze_13156 Corylus avellana HOM05D006713 ORTHO05D008601 1.9e-37 159.1 103 75.7
CARHR003020 Cardamine hirsuta HOM05D006713 ORTHO05D008601 2.5e-37 158.7 102 76.5
Potri.013G132100 Populus trichocarpa HOM05D006713 ORTHO05D008601 2.5e-37 158.7 103 73.8
BcaC07g42233 Brassica carinata HOM05D006713 ORTHO05D008601 3.3e-37 158.3 101 77.2
C08p52690 Brassica napus HOM05D006713 ORTHO05D008601 3.3e-37 158.3 101 77.2
QL02p049491 Quercus lobata HOM05D006713 ORTHO05D008601 4.3e-37 157.9 102 75.5
QL08p038662 Quercus lobata HOM05D006713 ORTHO05D008601 4.3e-37 157.9 102 75.5
Eucgr.A01814 Eucalyptus grandis HOM05D006713 ORTHO05D008601 5.6e-37 157.5 103 74.8
GSVIVG01020539001 Vitis vinifera HOM05D006713 ORTHO05D008601 5.6e-37 157.5 101 76.2
AL1G13180 Arabidopsis lyrata HOM05D006713 ORTHO05D008601 1.2e-36 156.4 102 76.5
AT1G03687 Arabidopsis thaliana HOM05D006713 ORTHO05D008601 1.2e-36 156.4 102 76.5
Sabra13G0111600 Salix brachista HOM05D006713 ORTHO05D008601 2.8e-36 155.2 100 75.0
CANSAT78G0617 Cannabis sativa HOM05D006713 ORTHO05D008601 3.6e-36 154.8 101 75.2
Carub.0001s0279 Capsella rubella HOM05D006713 ORTHO05D008601 4.7e-36 154.5 102 75.5
TAR235G0002 Trochodendron aralioides HOM05D006713 ORTHO05D008601 4.7e-36 154.5 101 74.3
Sc21g0002760 Simmondsia chinensis HOM05D006713 ORTHO05D008601 1.0e-35 153.3 100 72.0
Dinv26425 Davidia involucrata HOM05D006713 ORTHO05D008601 1.4e-35 152.9 103 75.7
Duzib052G0863 Durio zibethinus HOM05D006713 ORTHO05D008601 1.4e-35 152.9 100 75.0
Gohir.D02G180200 Gossypium hirsutum HOM05D006713 ORTHO05D008601 1.4e-35 152.9 102 72.5
Gorai.005G201900 Gossypium raimondii HOM05D006713 ORTHO05D008601 1.4e-35 152.9 102 72.5
Gohir.A03G157000 Gossypium hirsutum HOM05D006713 ORTHO05D008601 1.8e-35 152.5 102 72.5
RcHm_v2.0_Chr2g0126401 Rosa chinensis HOM05D006713 ORTHO05D008601 4.0e-35 151.4 103 72.8
FAN02G3934 Fragaria x ananassa HOM05D006713 ORTHO05D008601 1.2e-34 149.8 103 71.8
Prupe.3G137200 Prunus persica HOM05D006713 ORTHO05D008601 1.5e-34 149.4 101 70.3
MBI06_g06484_MAGBIO Magnolia biondii HOM05D006713 ORTHO05D008601 2.0e-34 149.1 105 71.4
Ah.01g015180 Amaranthus hybridus HOM05D006713 ORTHO05D008601 2.6e-34 148.7 100 72.0
CSS0037354 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 2.6e-34 148.7 101 75.2
FAN05G2673 Fragaria x ananassa HOM05D006713 ORTHO05D008601 2.6e-34 148.7 103 71.8
vmacro12297 Vaccinium macrocarpon HOM05D006713 ORTHO05D008601 2.6e-34 148.7 101 74.3
Migut.H01188 Erythranthe guttata HOM05D006713 ORTHO05D008601 3.4e-34 148.3 102 72.5
THA.LOC104815960 Tarenaya hassleriana HOM05D006713 ORTHO05D008601 4.4e-34 147.9 102 69.6
EL10Ac9g20760 Beta vulgaris HOM05D006713 ORTHO05D008601 5.7e-34 147.5 100 71.0
FvH4_6g26190 Fragaria vesca HOM05D006713 ORTHO05D008601 7.5e-34 147.1 103 70.9
Hund01101 Selenicereus undatus HOM05D006713 ORTHO05D008601 1.3e-33 146.4 103 67.0
FAN09G0901 Fragaria x ananassa HOM05D006713 ORTHO05D008601 2.2e-33 145.6 103 70.9
Rhsim06G0143600 Rhododendron simsii HOM05D006713 ORTHO05D008601 2.2e-33 145.6 101 73.3
Nn1g06572 Nelumbo nucifera HOM05D006713 ORTHO05D008601 6.4e-33 144.1 104 71.2
HanXRQChr17g0556501 Helianthus annuus HOM05D006713 ORTHO05D008601 8.3e-33 143.7 101 68.3
MSTRG.12823 Avicennia marina HOM05D006713 ORTHO05D008601 1.4e-32 142.9 101 71.3
CAN.G248.32 Capsicum annuum HOM05D006713 ORTHO05D008601 1.4e-32 142.9 103 66.0
MELO3C013617.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.8e-32 142.5 103 68.9
Peaxi162Scf00132g00240 Petunia axillaris HOM05D006713 ORTHO05D008601 2.4e-32 142.1 101 70.3
Aa31LG1G20990 Aethionema arabicum HOM05D006713 ORTHO05D008601 3.2e-32 141.7 100 70.0
CsaV3_6G012990 Cucumis sativus L. HOM05D006713 ORTHO05D008601 3.2e-32 141.7 103 68.9
ECA234G3347 Erigeron canadensis HOM05D006713 ORTHO05D008601 3.2e-32 141.7 103 68.9
Actinidia09856 Actinidia chinensis HOM05D006713 ORTHO05D008601 5.4e-32 141.0 92 76.1
Lsat_1_v5_gn_8_133201 Lactuca sativa HOM05D006713 ORTHO05D008601 5.4e-32 141.0 101 68.3
Solyc07g054070.4 Solanum lycopersicum HOM05D006713 ORTHO05D008601 5.4e-32 141.0 103 66.0
DCAR_021241 Daucus carota HOM05D006713 ORTHO05D008601 7.0e-32 140.6 101 73.3
PGSC0003DMG400018345 Solanum tuberosum HOM05D006713 ORTHO05D008601 9.2e-32 140.2 101 66.3
ClCG02G017610 Citrullus lanatus HOM05D006713 ORTHO05D008601 2.0e-31 139.0 97 72.2
Aqoxy1G02470 Aquilegia oxysepala HOM05D006713 ORTHO05D008601 2.7e-31 138.7 102 66.7
Nitab4.5_0002169g0110 Nicotiana tabacum HOM05D006713 ORTHO05D008601 2.7e-31 138.7 101 69.3
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 5.0e-30 134.4 98 69.4
PSO541G1719 Papaver somniferum HOM05D006713 ORTHO05D008601 6.6e-30 134.0 102 64.7
PSO675G6747 Papaver somniferum HOM05D006713 ORTHO05D008601 1.1e-29 133.3 102 64.7
CDE10G0241 Ceratophyllum demersum HOM05D006713 ORTHO05D008601 2.5e-29 132.1 104 67.3
Hma1.2p1_1201F.1_g266570 Hydrangea macrophylla HOM05D006713 ORTHO05D008601 3.3e-29 131.7 102 64.7
AUR62038189 Chenopodium quinoa HOM05D006713 ORTHO05D008601 4.3e-29 131.3 99 65.7
Cc05_g07100 Coffea canephora HOM05D006713 ORTHO05D008601 4.3e-29 131.3 103 65.0
Zm00001eb273220 Zea mays HOM05D006713 ORTHO05D008601 1.2e-28 129.8 103 64.1
Nitab4.5_0000512g0100 Nicotiana tabacum HOM05D006713 ORTHO05D008601 1.6e-28 129.4 97 68.0
ATR0665G517 Amborella trichopoda HOM05D006713 ORTHO05D008601 3.6e-28 128.3 104 63.5
Cpa.g.sc34.156 Carica papaya HOM05D006713 ORTHO05D008601 8.9e-27 123.6 77 77.9
Os06g0343000 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 1.5e-26 122.9 100 62.0
HPP92_023892 Vanilla planifolia HOM05D006713 ORTHO05D008601 3.4e-26 121.7 105 59.0
HPP92_023829 Vanilla planifolia HOM05D006713 ORTHO05D008601 5.8e-26 120.9 104 58.7
unitig_62.g23167 Utricularia gibba HOM05D006713 ORTHO05D008601 1.7e-25 119.4 89 66.3
AagrBONN_evm.TU.Sc2ySwM_117.1346 Anthoceros agrestis HOM05D006713 ORTHO05D008601 1.8e-19 99.4 102 52.9
MELO3C013610.2 Cucumis melo HOM05D006713 ORTHO05D008601 5.2e-19 97.8 71 70.4
Lj8A113G48 Lonicera japonica HOM05D006713 ORTHO05D008601 4.4e-18 94.7 96 54.2
AUR62038063 Chenopodium quinoa HOM05D006713 ORTHO05D008601 1.3e-17 93.2 59 78.0
Mapoly0088s0019 Marchantia polymorpha HOM05D006713 ORTHO05D008601 3.2e-16 88.6 98 45.9
CBR_g35040 Chara braunii HOM05D006713 ORTHO05D008601 1.2e-15 86.7 98 48.0
SEGI_39135 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 2.3e-14 82.4 100 43.0
SMO117G0197 Selaginella moellendorffii HOM05D006713 ORTHO05D008601 1.8e-11 72.8 100 42.0
Phvul.005G104000 Phaseolus vulgaris HOM05D006713 ORTHO05D008601 5.2e-11 71.2 34 94.1
Oeu023431.1 Olea europaea HOM05D006713 ORTHO05D008601 8.9e-11 70.5 52 71.2
Manes.12G089598 Manihot esculenta HOM05D006713 ORTHO05D008601 6.0e-07 57.8 34 73.5
Thecc.02G179100 Theobroma cacao HOM05D006713 ORTHO05D008601 6.0e-07 57.8 34 73.5


User provided reference genes

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