Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 1.1e-297 1025.8 502 100.0
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 1.1e-279 966.1 502 94.6
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.7e-264 914.4 497 90.3
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 2.0e-262 908.7 497 89.1
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.4e-178 630.2 514 64.2
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 3.0e-173 612.5 514 61.5
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 4.9e-168 595.1 493 60.9
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 4.6e-166 588.6 494 61.3
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 6.0e-166 588.2 522 56.7
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 6.2e-163 578.2 507 57.2
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 3.1e-162 575.9 525 56.0
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 3.1e-162 575.9 537 56.2
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.0e-162 574.3 510 58.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.0e-161 573.2 509 58.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.0e-161 573.2 509 58.0
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.4e-161 572.4 536 55.6
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.7e-160 570.1 529 55.8
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.2e-160 569.7 508 57.5
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 2.2e-160 569.7 514 57.0
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.9e-160 569.3 509 58.0
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.1e-159 567.4 513 56.9
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 2.5e-159 566.2 518 56.8
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 4.2e-159 565.5 535 55.0
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.6e-158 563.5 529 55.8
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 7.9e-158 561.2 522 55.0
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.3e-156 555.8 530 54.3
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.6e-155 553.5 523 55.4
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.1e-154 550.8 523 55.1
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.8e-154 550.1 521 55.3
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 7.6e-153 544.7 525 54.1
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.9e-151 540.0 516 56.4
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 2.5e-151 539.7 516 55.6
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.1e-150 536.6 517 54.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 2.1e-150 536.6 522 55.2
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.0e-149 534.3 548 52.7
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.0e-149 534.3 548 52.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.3e-149 533.1 551 52.5
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 3.9e-149 532.3 514 52.7
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.9e-148 530.0 553 51.9
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 2.8e-147 526.2 538 51.5
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 8.2e-147 524.6 518 53.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 8.2e-147 524.6 536 51.5
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 6.9e-146 521.5 514 51.9
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.2e-145 520.8 542 53.3
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.7e-144 516.9 503 54.3
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.7e-144 516.9 552 51.4
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.1e-143 514.2 512 53.3
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.9e-143 513.5 533 51.4
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 4.7e-142 508.8 509 54.0
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 6.1e-142 508.4 527 52.2
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 2.6e-140 503.1 517 52.0
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 4.4e-140 502.3 524 52.3
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 4.4e-140 502.3 514 50.0
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 5.7e-140 501.9 522 51.5
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 7.4e-140 501.5 506 53.0
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 7.4e-140 501.5 513 50.3
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.7e-139 499.2 504 53.4
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 4.1e-138 495.7 519 50.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 9.1e-138 494.6 551 50.8
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.3e-136 490.7 519 49.7
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.3e-136 490.7 474 54.6
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 3.8e-136 489.2 523 50.5
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 6.5e-136 488.4 526 50.0
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.2e-135 486.1 556 49.5
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 9.4e-135 484.6 527 49.7
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 3.6e-134 482.6 517 49.5
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 3.9e-133 479.2 528 49.1
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.0e-132 476.9 512 51.4
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 4.4e-132 475.7 530 50.0
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 4.4e-132 475.7 527 49.5
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 7.4e-132 474.9 546 47.1
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.7e-131 473.8 539 47.9
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 3.7e-131 472.6 519 48.6
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 6.3e-131 471.9 518 47.3
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.1e-130 471.1 544 48.0
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.6e-129 466.5 521 48.2
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 5.9e-129 465.3 520 46.3
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.3e-128 464.2 519 46.2
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.3e-128 464.2 546 46.7
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.8e-128 462.6 521 45.7
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 8.5e-128 461.5 523 47.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.9e-127 460.3 509 48.5
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 4.2e-127 459.1 520 49.6
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 4.2e-127 459.1 526 46.8
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 7.2e-127 458.4 509 48.3
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 2.1e-126 456.8 526 46.6
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.3e-125 453.4 555 46.7
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 4.0e-125 452.6 508 47.4
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 6.7e-125 451.8 519 45.3
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 4.4e-124 449.1 508 47.0
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 4.4e-124 449.1 517 45.5
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 7.5e-124 448.4 504 47.8
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 2.2e-123 446.8 523 46.1
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 3.7e-123 446.0 513 45.2
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 6.3e-123 445.3 513 45.2
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 8.2e-123 444.9 508 46.1
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 8.2e-123 444.9 544 46.1
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.1e-122 444.5 512 47.5
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.8e-122 443.7 514 44.6
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-121 441.0 514 45.5
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.6e-121 440.7 515 45.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 8.5e-120 434.9 506 48.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.1e-118 428.7 504 47.2
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.8e-117 427.2 562 42.2
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 3.6e-110 402.9 473 48.0
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 8.3e-107 391.7 527 42.9
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.6e-105 387.5 469 47.8
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 3.5e-105 386.3 523 41.9
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 3.8e-104 382.9 529 40.8
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-103 381.3 488 44.1
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 4.3e-103 379.4 497 42.9
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 5.6e-103 379.0 500 44.4
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 9.5e-103 378.3 562 39.5
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.2e-99 367.1 511 40.1
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 3.3e-95 353.2 503 42.3
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 9.8e-92 341.7 405 46.4
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 3.7e-91 339.7 518 39.4
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.4e-90 335.9 488 41.0
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 4.9e-83 312.8 474 39.2
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.4e-82 311.2 558 36.9
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.8e-81 305.4 474 38.0
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-80 305.1 474 37.8
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.9e-75 287.0 453 38.2
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-74 285.0 453 38.0
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-71 274.6 505 35.8
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 7.3e-71 272.3 480 34.2
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-60 238.0 448 35.3
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-60 238.0 448 35.3
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.9e-56 223.4 396 36.4
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.3e-48 197.6 157 58.6
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 2.1e-46 191.0 302 40.7
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.1e-45 188.7 275 42.2
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.5e-44 184.9 505 28.9
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.1e-42 178.7 143 62.9
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.5e-42 177.6 465 29.7
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.3e-38 162.9 389 30.3
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 8.2e-38 162.5 397 30.7
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.1e-37 162.2 532 24.1
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 6.9e-37 159.5 433 28.6
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.5e-34 151.0 529 24.6
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.1e-29 135.6 478 27.0
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 9.4e-26 122.5 409 25.4
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 7.0e-21 106.3 180 43.3
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 7.7e-20 102.8 490 21.8
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 7.2e-18 96.3 83 56.6
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 3.6e-17 94.0 124 40.3
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-15 88.2 278 29.5
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.0e-15 88.2 66 59.1
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.3e-14 83.2 393 23.4
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.4e-13 82.0 57 56.1
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 2.4e-13 81.3 57 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 2.0e-12 78.2 133 33.1
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.0e-12 78.2 390 20.5
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-09 66.2 53 52.8
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 7.5e-07 59.7 60 40.0
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 1.3e-06 58.9 205 25.4


User provided reference genes

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