Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 9.0e-55 216.9 123 100.0
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 1.3e-50 203.0 123 85.4
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 1.1e-41 173.3 127 70.9
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 1.9e-41 172.6 127 74.0
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 6.2e-32 141.0 133 61.7
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 4.0e-31 138.3 128 60.2
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.7e-29 132.9 133 58.6
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.7e-29 132.9 129 58.1
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.1e-28 130.2 125 58.4
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 1.5e-25 119.8 128 56.2
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 6.3e-24 114.4 141 51.1
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 1.8e-23 112.8 141 50.4
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 2.4e-23 112.5 140 50.0
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 5.0e-21 104.8 131 48.9
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 8.5e-21 104.0 133 52.6
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 8.5e-21 104.0 133 52.6
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.1e-20 103.6 138 52.2
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.1e-20 103.6 114 57.9
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 1.4e-20 103.2 135 49.6
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 3.2e-20 102.1 136 50.7
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 4.2e-20 101.7 142 49.3
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 7.2e-20 100.9 136 48.5
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 7.2e-20 100.9 136 48.5
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.6e-19 99.8 126 50.0
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 1.6e-19 99.8 135 49.6
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 2.7e-19 99.0 137 51.1
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 3.6e-19 98.6 130 50.8
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 4.6e-19 98.2 132 48.5
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 6.1e-19 97.8 137 46.0
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 1.0e-18 97.1 122 50.8
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.0e-18 95.5 136 47.1
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 5.1e-18 94.7 125 48.8
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.1e-18 94.7 136 47.1
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.9e-17 92.8 136 47.8
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 2.5e-17 92.4 130 48.5
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 3.3e-17 92.0 125 50.4
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 3.3e-17 92.0 137 47.4
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 9.7e-17 90.5 116 42.2
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.3e-16 90.1 128 48.4
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 2.8e-16 89.0 137 45.3
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.7e-16 88.6 125 48.8
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 3.7e-16 88.6 142 42.3
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 4.8e-16 88.2 125 48.0
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 6.3e-16 87.8 121 48.8
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 6.3e-16 87.8 126 50.0
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 8.2e-16 87.4 125 48.0
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.4e-15 86.7 121 47.9
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.4e-15 86.7 125 48.8
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.4e-15 85.9 137 46.0
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 6.9e-15 84.3 108 50.9
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 9.1e-15 84.0 125 47.2
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 9.1e-15 84.0 107 49.5
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.2e-14 83.6 108 48.1
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 5.9e-14 81.3 110 47.3
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 5.9e-14 81.3 127 43.3
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 7.7e-14 80.9 114 57.9
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 7.7e-14 80.9 127 46.5
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 8.5e-13 77.4 123 55.3
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 8.5e-13 77.4 125 45.6
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.5e-12 75.9 95 49.5
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 2.5e-12 75.9 124 43.5
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 3.2e-12 75.5 118 42.4
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.5e-12 74.7 108 48.1
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 7.2e-12 74.3 131 49.6
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 9.4e-12 73.9 122 43.4
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 9.4e-12 73.9 122 43.4
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 2.7e-11 72.4 99 44.4
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 3.6e-11 72.0 121 40.5
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 4.7e-11 71.6 138 39.9
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 7.9e-11 70.9 121 43.0
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 1.0e-10 70.5 99 44.4
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 1.4e-10 70.1 122 42.6
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.3e-10 69.3 108 47.2
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 3.0e-10 68.9 122 41.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 8.8e-10 67.4 102 45.1
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 8.8e-10 67.4 86 51.2
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.1e-09 67.0 111 41.4
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 1.1e-09 67.0 104 40.4
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 1.1e-09 67.0 143 37.8
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 1.5e-09 66.6 101 40.6
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 1.5e-09 66.6 105 51.4
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 1.5e-09 66.6 125 35.2
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 2.0e-09 66.2 142 37.3
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 4.8e-08 61.6 87 43.7
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 6.3e-08 61.2 102 38.2
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 6.3e-08 61.2 119 37.0
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 8.2e-08 60.8 90 44.4
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 8.2e-08 60.8 93 43.0
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 1.4e-07 60.1 102 40.2
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 1.8e-07 59.7 107 38.3
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.8e-07 59.7 101 39.6
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 2.4e-07 59.3 102 40.2
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 2.4e-07 59.3 105 39.0
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.4e-07 59.3 99 43.4
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.1e-07 58.9 99 42.4
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.1e-07 58.9 99 42.4
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 5.3e-07 58.2 101 39.6
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 7.0e-07 57.8 102 40.2
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.2e-06 57.0 105 37.1
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 1.5e-06 56.6 102 39.2
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 1.5e-06 56.6 117 35.9
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 2.0e-06 56.2 91 44.0
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 2.6e-06 55.8 114 45.6
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 3.4e-06 55.5 117 35.9
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 4.5e-06 55.1 120 35.0
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 5.9e-06 54.7 98 39.8
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 7.7e-06 54.3 101 36.6


User provided reference genes

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