Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 3.1e-164 582.4 472 100.0
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 2.0e-115 420.2 478 83.7
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 1.2e-99 367.9 493 72.8
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 4.2e-92 342.8 478 74.1
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 3.9e-90 336.3 477 71.9
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 3.0e-82 310.1 486 63.6
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 3.0e-82 310.1 477 65.8
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 1.7e-77 294.3 485 68.9
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 1.8e-66 257.7 485 67.0
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 6.2e-64 249.2 333 49.2
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 8.2e-64 248.8 471 65.2
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 1.7e-61 241.1 493 55.0
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 1.6e-43 181.4 505 57.0
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 2.6e-38 164.1 501 51.7
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.0e-37 162.2 489 58.3
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 1.1e-36 158.7 484 57.2
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 1.4e-36 158.3 488 58.2
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 2.5e-36 157.5 498 46.0
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.2e-35 155.2 488 58.0
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 6.1e-35 152.9 473 57.3
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 1.8e-34 151.4 482 52.3
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 4.4e-33 146.7 482 50.4
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.4e-33 146.0 479 47.2
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 6.3e-32 142.9 487 49.5
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.8e-31 141.4 484 55.2
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 4.1e-31 140.2 492 53.7
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 5.3e-31 139.8 476 56.3
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 7.0e-31 139.4 495 55.6
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 1.6e-30 138.3 267 37.8
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 5.9e-30 136.3 476 53.2
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.9e-28 131.3 265 39.2
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.2e-27 128.6 556 49.1
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 3.6e-27 127.1 263 36.9
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 4.7e-27 126.7 486 53.5
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 8.0e-27 125.9 518 51.4
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.8e-26 122.5 289 37.0
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 8.8e-26 122.5 482 56.2
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.0e-25 121.3 491 44.0
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 2.0e-25 121.3 277 36.1
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 2.0e-25 121.3 277 36.1
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 2.6e-25 120.9 267 36.0
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 4.4e-25 120.2 487 53.0
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 5.7e-25 119.8 504 51.4
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 5.7e-25 119.8 517 50.5
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.3e-24 118.6 476 51.1
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 1.7e-24 118.2 269 35.7
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 2.2e-24 117.9 473 52.2
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 3.7e-24 117.1 523 50.1
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 6.3e-24 116.3 494 52.8
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 6.3e-24 116.3 271 36.5
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 1.2e-22 112.1 476 55.3
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.2e-22 112.1 491 45.6
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 2.0e-22 111.3 306 35.3
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 1.3e-21 108.6 283 33.2
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.7e-21 108.2 477 53.9
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 3.8e-21 107.1 498 41.8
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 5.0e-21 106.7 502 48.6
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 8.5e-21 105.9 488 51.4
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 2.5e-20 104.4 490 51.4
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 4.2e-20 103.6 482 46.1
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.1e-19 101.3 293 34.1
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 2.7e-19 100.9 475 35.8
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 3.6e-19 100.5 247 39.3
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 4.7e-19 100.1 274 32.5
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 8.0e-19 99.4 287 33.4
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 8.0e-19 99.4 469 53.9
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 4.0e-18 97.1 483 36.2
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 5.2e-18 96.7 475 51.6
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 6.8e-18 96.3 481 41.6
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 2.0e-17 94.7 267 31.5
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 9.8e-17 92.4 362 56.4
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.3e-16 92.0 268 34.0
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 3.7e-16 90.5 482 42.5
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.1e-15 89.0 509 40.1
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 2.4e-15 87.8 472 51.5
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 5.9e-14 83.2 470 41.9
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 7.7e-14 82.8 269 31.6
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.0e-13 82.4 481 40.3
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 1.3e-13 82.0 479 46.6
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 2.9e-13 80.9 155 39.4
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 3.8e-13 80.5 278 30.2
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 3.8e-13 80.5 475 49.7
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 2.5e-12 77.8 483 49.7
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 4.7e-11 73.6 65 55.4
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.7e-11 73.6 356 61.8
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 6.1e-11 73.2 60 60.0
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 4.0e-10 70.5 60 58.3
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 6.8e-10 69.7 482 44.4
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 8.9e-10 69.3 267 30.3
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 1.2e-09 68.9 506 49.0
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 4.1e-07 60.5 480 48.5
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 9.2e-07 59.3 52 55.8
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 1.6e-06 58.5 262 28.6
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 2.7e-06 57.8 75 44.0
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 4.5e-06 57.0 75 44.0
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 5.9e-06 56.6 106 39.6


User provided reference genes

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