Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 3.9e-35 151.4 104 100.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.1e-28 129.0 104 91.3
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 9.0e-24 113.6 104 77.9
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 2.5e-21 105.5 104 60.6
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 4.1e-16 88.2 104 72.1
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 5.3e-16 87.8 102 74.5
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 6.5e-14 80.9 100 55.0
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 1.4e-13 79.7 105 48.6
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.9e-13 79.3 107 50.5
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 4.2e-13 78.2 102 50.0
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 5.5e-13 77.8 107 49.5
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.2e-12 76.6 101 51.5
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.1e-12 75.9 107 49.5
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.1e-12 75.9 107 49.5
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 2.1e-12 75.9 109 47.7
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.1e-12 75.9 106 50.9
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 2.1e-12 75.9 101 51.5
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.7e-12 75.5 103 46.6
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 2.7e-12 75.5 94 51.1
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 3.6e-12 75.1 104 44.2
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 7.9e-12 73.9 93 48.4
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.0e-11 73.6 109 49.5
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.4e-11 73.2 93 52.7
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.3e-11 72.4 82 54.9
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.0e-11 72.0 105 46.7
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 3.0e-11 72.0 95 46.3
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.9e-11 71.6 105 67.6
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 3.9e-11 71.6 84 54.8
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 5.1e-11 71.2 94 47.9
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 6.7e-11 70.9 105 47.6
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.7e-11 70.9 106 47.2
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 8.8e-11 70.5 104 48.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.1e-10 70.1 86 53.5
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.1e-10 70.1 107 45.8
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.1e-10 70.1 105 46.7
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-10 69.7 94 47.9
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.0e-10 69.3 94 47.9
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.0e-10 69.3 94 47.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.0e-10 69.3 104 47.1
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.0e-10 69.3 96 47.9
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.0e-10 69.3 95 49.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 2.5e-10 68.9 107 51.4
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.3e-10 68.6 105 46.7
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 3.3e-10 68.6 107 43.9
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 3.3e-10 68.6 107 60.7
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 4.3e-10 68.2 72 81.9
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.3e-10 68.2 106 48.1
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.3e-10 68.2 104 46.2
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 4.3e-10 68.2 111 49.5
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 5.7e-10 67.8 88 50.0
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 5.7e-10 67.8 95 44.2
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 5.7e-10 67.8 95 44.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 7.4e-10 67.4 108 45.4
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 7.4e-10 67.4 72 69.4
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 7.4e-10 67.4 93 45.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 9.7e-10 67.0 94 44.7
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 9.7e-10 67.0 107 43.9
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.7e-10 67.0 102 43.1
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.7e-09 66.2 105 47.6
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.2e-09 65.9 103 42.7
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.2e-09 65.9 86 46.5
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 3.7e-09 65.1 101 44.6
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.7e-09 65.1 80 47.5
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 4.8e-09 64.7 108 49.1
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 6.3e-09 64.3 81 53.1
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 8.2e-09 63.9 88 50.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.1e-08 63.5 99 52.5
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.1e-08 63.5 88 47.7
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.4e-08 63.2 81 51.9
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.4e-08 63.2 98 46.9
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.8e-08 62.8 97 45.4
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.4e-08 62.4 102 45.1
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.4e-08 62.4 101 42.6
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 2.4e-08 62.4 95 38.9
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.1e-08 62.0 104 41.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 3.1e-08 62.0 103 41.7
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 3.1e-08 62.0 113 39.8
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 3.1e-08 62.0 105 56.2
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.1e-08 62.0 93 46.2
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 4.1e-08 61.6 101 41.6
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 6.9e-08 60.8 91 57.1
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 9.1e-08 60.5 91 45.1
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 9.1e-08 60.5 119 38.7
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 9.1e-08 60.5 104 46.2
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 9.1e-08 60.5 104 46.2
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 9.1e-08 60.5 79 50.6
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.1e-08 60.5 93 46.2
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 9.1e-08 60.5 108 43.5
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 9.1e-08 60.5 101 56.4
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.2e-07 60.1 95 48.4
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.5e-07 59.7 105 41.9
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.5e-07 59.7 96 45.8
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.5e-07 59.7 94 44.7
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.0e-07 59.3 108 41.7
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.0e-07 59.3 96 43.8
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.0e-07 59.3 106 37.7
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.4e-07 58.5 94 37.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 4.5e-07 58.2 98 42.9
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.5e-07 58.2 96 45.8
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 5.9e-07 57.8 103 41.7
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.9e-07 57.8 103 40.8
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 5.9e-07 57.8 95 40.0
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.9e-07 57.8 79 62.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 5.9e-07 57.8 98 41.8
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.0e-06 57.0 31 93.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.0e-06 57.0 31 93.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.3e-06 56.6 83 44.6
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.3e-06 56.6 96 42.7
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.3e-06 56.6 94 44.7
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.7e-06 56.2 85 42.4
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.7e-06 56.2 95 57.9
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.7e-06 56.2 103 37.9
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 2.2e-06 55.8 107 58.9
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 2.2e-06 55.8 31 93.5
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.9e-06 55.5 93 40.9
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.8e-06 55.1 104 42.3
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 3.8e-06 55.1 108 37.0
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.8e-06 55.1 31 90.3
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.8e-06 55.1 31 90.3
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 6.5e-06 54.3 107 39.3
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 8.5e-06 53.9 75 48.0


User provided reference genes

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