Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G163601 Glycine max HOM05D001198 ORTHO05D001599 1.9e-56 222.2 109 100.0
Glyma.09G086100 Glycine max HOM05D001198 ORTHO05D001599 4.1e-51 204.5 107 94.4
VMungo0251G1289 Vigna mungo HOM05D001198 ORTHO05D001599 3.0e-30 135.2 103 66.0
Phvul.003G049700 Phaseolus vulgaris HOM05D001198 ORTHO05D001599 2.6e-29 132.1 96 69.8
Lj6g0019922 Lotus japonicus HOM05D001198 ORTHO05D001599 1.2e-26 123.2 108 63.0
Lalb_Chr08g0234191 Lupinus albus HOM05D001198 ORTHO05D001599 4.7e-23 111.3 87 62.1
arahy.Tifrunner.gnm1.ann1.2PHP7C Arachis hypogaea HOM05D001198 ORTHO05D001599 1.2e-18 96.7 94 55.3
arahy.Tifrunner.gnm1.ann1.837L0J Arachis hypogaea HOM05D001198 ORTHO05D001599 5.9e-18 94.4 105 52.4
Cfa020821 Carpinus fangiana HOM05D001198 ORTHO05D001599 2.5e-16 89.0 105 47.6
Haze_19200 Corylus avellana HOM05D001198 ORTHO05D001599 2.8e-15 85.5 94 46.8
Dinv42849 Davidia involucrata HOM05D001198 ORTHO05D001599 1.0e-14 83.6 77 53.2
Dinv43251 Davidia involucrata HOM05D001198 ORTHO05D001599 1.0e-14 83.6 77 53.2
arahy.Tifrunner.gnm1.ann1.8Z2PYB Arachis hypogaea HOM05D001198 ORTHO05D001599 1.8e-14 82.8 70 60.0
Potri.018G106400 Populus trichocarpa HOM05D001198 ORTHO05D001599 5.2e-14 81.3 69 60.9
Sabra18G0090600 Salix brachista HOM05D001198 ORTHO05D001599 8.9e-14 80.5 69 59.4
TWI63G1093 Tripterygium wilfordii HOM05D001198 ORTHO05D001599 1.2e-13 80.1 82 52.4
Sabra06G0139700 Salix brachista HOM05D001198 ORTHO05D001599 5.8e-13 77.8 99 45.5
QL02p093345 Quercus lobata HOM05D001198 ORTHO05D001599 7.5e-13 77.4 69 55.1
arahy.Tifrunner.gnm1.ann1.MHD2AA Arachis hypogaea HOM05D001198 ORTHO05D001599 1.3e-12 76.6 87 49.4
Potri.006G183900 Populus trichocarpa HOM05D001198 ORTHO05D001599 1.3e-12 76.6 69 56.5
DCAR_019398 Daucus carota HOM05D001198 ORTHO05D001599 2.2e-12 75.9 63 55.6
Manes.09G102900 Manihot esculenta HOM05D001198 ORTHO05D001599 2.2e-12 75.9 71 56.3
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 4.9e-12 74.7 79 45.6
Ciclev10008334m.g Citrus clementina HOM05D001198 ORTHO05D001599 6.4e-12 74.3 87 47.1
GSVIVG01023615001 Vitis vinifera HOM05D001198 ORTHO05D001599 6.4e-12 74.3 78 50.0
MSTRG.4367 Avicennia marina HOM05D001198 ORTHO05D001599 1.1e-11 73.6 78 48.7
CAN.G160.65 Capsicum annuum HOM05D001198 ORTHO05D001599 1.4e-11 73.2 78 47.4
Gohir.D08G273500 Gossypium hirsutum HOM05D001198 ORTHO05D001599 2.4e-11 72.4 73 54.8
Gorai.004G291900 Gossypium raimondii HOM05D001198 ORTHO05D001599 2.4e-11 72.4 73 54.8
Peaxi162Scf00401g00618 Petunia axillaris HOM05D001198 ORTHO05D001599 2.4e-11 72.4 78 48.7
AUR62016602 Chenopodium quinoa HOM05D001198 ORTHO05D001599 3.2e-11 72.0 94 43.6
TAR383G0766 Trochodendron aralioides HOM05D001198 ORTHO05D001599 4.1e-11 71.6 78 44.9
MELO3C010216.2 Cucumis melo HOM05D001198 ORTHO05D001599 5.4e-11 71.2 81 50.6
CsaV3_1G029000 Cucumis sativus L. HOM05D001198 ORTHO05D001599 5.4e-11 71.2 81 50.6
Gohir.A08G251900 Gossypium hirsutum HOM05D001198 ORTHO05D001599 5.4e-11 71.2 73 53.4
CANSAT11G1434 Cannabis sativa HOM05D001198 ORTHO05D001599 7.0e-11 70.9 76 50.0
Eucgr.C02537 Eucalyptus grandis HOM05D001198 ORTHO05D001599 7.0e-11 70.9 83 48.2
Nitab4.5_0009049g0010 Nicotiana tabacum HOM05D001198 ORTHO05D001599 7.0e-11 70.9 85 47.1
Prupe.7G263600 Prunus persica HOM05D001198 ORTHO05D001599 7.0e-11 70.9 71 47.9
Sed0018966 Sechium edule HOM05D001198 ORTHO05D001599 7.0e-11 70.9 83 48.2
Atru.chr7.36 Acer truncatum HOM05D001198 ORTHO05D001599 9.2e-11 70.5 82 43.9
Nitab4.5_0011835g0010 Nicotiana tabacum HOM05D001198 ORTHO05D001599 9.2e-11 70.5 85 47.1
Psat5g263840 Pisum sativum HOM05D001198 ORTHO05D001599 9.2e-11 70.5 40 82.5
Solyc07g005570.4 Solanum lycopersicum HOM05D001198 ORTHO05D001599 9.2e-11 70.5 78 46.2
Sopen07g001670 Solanum pennellii HOM05D001198 ORTHO05D001599 9.2e-11 70.5 78 46.2
PGSC0003DMG400011182 Solanum tuberosum HOM05D001198 ORTHO05D001599 9.2e-11 70.5 78 47.4
Thecc.09G029300 Theobroma cacao HOM05D001198 ORTHO05D001599 9.2e-11 70.5 77 48.1
Eucgr.C02496 Eucalyptus grandis HOM05D001198 ORTHO05D001599 1.2e-10 70.1 84 48.8
Hund06539 Selenicereus undatus HOM05D001198 ORTHO05D001599 2.0e-10 69.3 77 50.6
Ca_01978_v3 Cicer arietinum L. HOM05D001198 ORTHO05D001599 2.7e-10 68.9 33 93.9
COL.COLO4_18814 Corchorus olitorius HOM05D001198 ORTHO05D001599 2.7e-10 68.9 111 42.3
PGR102G1370 Punica granatum HOM05D001198 ORTHO05D001599 3.5e-10 68.6 58 60.3
Sc09g0009330 Simmondsia chinensis HOM05D001198 ORTHO05D001599 6.0e-10 67.8 81 48.1
ATR0580G368 Amborella trichopoda HOM05D001198 ORTHO05D001599 7.8e-10 67.4 56 57.1
EL10Ac6g14952 Beta vulgaris HOM05D001198 ORTHO05D001599 7.8e-10 67.4 82 42.7
CARHR271710 Cardamine hirsuta HOM05D001198 ORTHO05D001599 7.8e-10 67.4 77 44.2
Migut.J01348 Erythranthe guttata HOM05D001198 ORTHO05D001599 7.8e-10 67.4 76 46.1
Lj9A717G70 Lonicera japonica HOM05D001198 ORTHO05D001599 7.8e-10 67.4 79 46.8
THA.LOC104811834 Tarenaya hassleriana HOM05D001198 ORTHO05D001599 1.3e-09 66.6 106 36.8
CSS0024979 Camellia sinensis var. sinensis HOM05D001198 ORTHO05D001599 1.7e-09 66.2 77 44.2
CiPaw.16G110400 Carya illinoinensis HOM05D001198 ORTHO05D001599 1.7e-09 66.2 113 38.9
TPR.G27010 Trifolium pratense HOM05D001198 ORTHO05D001599 2.3e-09 65.9 33 90.9
arahy.Tifrunner.gnm1.ann1.9BJ9H4 Arachis hypogaea HOM05D001198 ORTHO05D001599 3.0e-09 65.5 33 87.9
Cpa.g.sc136.43 Carica papaya HOM05D001198 ORTHO05D001599 3.0e-09 65.5 76 47.4
SGA_v2.0_scaffold45G17032 Striga asiatica HOM05D001198 ORTHO05D001599 3.0e-09 65.5 87 43.7
Carub.0008s1846 Capsella rubella HOM05D001198 ORTHO05D001599 3.9e-09 65.1 106 36.8
HPP92_002521 Vanilla planifolia HOM05D001198 ORTHO05D001599 3.9e-09 65.1 57 61.4
ClCG06G012440 Citrullus lanatus HOM05D001198 ORTHO05D001599 5.0e-09 64.7 83 44.6
Medtr2g088390 Medicago truncatula HOM05D001198 ORTHO05D001599 5.0e-09 64.7 33 90.9
MD15G1151800 Malus domestica HOM05D001198 ORTHO05D001599 8.6e-09 63.9 71 43.7
EL10Ac5g11747 Beta vulgaris HOM05D001198 ORTHO05D001599 1.1e-08 63.5 37 70.3
Cc06_g14880 Coffea canephora HOM05D001198 ORTHO05D001599 1.5e-08 63.2 79 48.1
MD02G1006800 Malus domestica HOM05D001198 ORTHO05D001599 1.5e-08 63.2 73 47.9
Aa31LG3G13760 Aethionema arabicum HOM05D000122 ORTHO05D000139 1.9e-08 62.8 109 34.9
FAN27G0938 Fragaria x ananassa HOM05D001198 ORTHO05D001599 1.9e-08 62.8 73 43.8
AL8G34000 Arabidopsis lyrata HOM05D001198 ORTHO05D001599 2.5e-08 62.4 76 47.4
FvH4_2g26040 Fragaria vesca HOM05D001198 ORTHO05D001599 2.5e-08 62.4 73 43.8
FAN24G2133 Fragaria x ananassa HOM05D001198 ORTHO05D001599 2.5e-08 62.4 73 43.8
PSO063G7340 Papaver somniferum HOM05D001198 ORTHO05D001599 2.5e-08 62.4 76 42.1
Duzib168G0751 Durio zibethinus HOM05D001198 ORTHO05D001599 3.3e-08 62.0 49 63.3
Aqoxy6G02963 Aquilegia oxysepala HOM05D001198 ORTHO05D001599 5.6e-08 61.2 63 46.0
AT5G57930 Arabidopsis thaliana HOM05D001198 ORTHO05D001599 5.6e-08 61.2 105 35.2
Actinidia24266 Actinidia chinensis HOM05D001198 ORTHO05D001599 7.3e-08 60.8 68 48.5
FAN15G2753 Fragaria x ananassa HOM05D001198 ORTHO05D001599 7.3e-08 60.8 49 53.1
Actinidia08315 Actinidia chinensis HOM05D001198 ORTHO05D001599 9.5e-08 60.5 83 44.6
PSO782G4792 Papaver somniferum HOM05D001198 ORTHO05D001599 9.5e-08 60.5 55 49.1
Rhsim07G0168000 Rhododendron simsii HOM05D001198 ORTHO05D001599 1.2e-07 60.1 76 43.4
HanXRQChr02g0049261 Helianthus annuus HOM05D001198 ORTHO05D001599 1.6e-07 59.7 44 65.9
Lsat_1_v5_gn_4_71881 Lactuca sativa HOM05D001198 ORTHO05D001599 1.6e-07 59.7 90 38.9
Oeu028994.1 Olea europaea HOM05D001198 ORTHO05D001599 1.6e-07 59.7 38 71.1
Sp6g19600 Schrenkiella parvula HOM05D001198 ORTHO05D001599 2.8e-07 58.9 82 43.9
Os02g0732900 Oryza sativa ssp. japonica HOM05D001198 ORTHO05D001599 4.7e-07 58.2 54 50.0
Thhalv10013543m.g Eutrema salsugineum HOM05D001198 ORTHO05D001599 6.2e-07 57.8 116 33.6
BcaB05g22387 Brassica carinata HOM05D001198 ORTHO05D001599 8.0e-07 57.4 35 68.6
A02p08100 Brassica napus HOM05D001198 ORTHO05D001599 8.0e-07 57.4 35 68.6
C02p13750 Brassica napus HOM05D001198 ORTHO05D001599 8.0e-07 57.4 35 68.6
BolC2t07493H Brassica oleracea HOM05D001198 ORTHO05D001599 8.0e-07 57.4 35 68.6
BraA02t05883Z Brassica rapa HOM05D001198 ORTHO05D001599 8.0e-07 57.4 35 68.6
RcHm_v2.0_Chr6g0294401 Rosa chinensis HOM05D001198 ORTHO05D001599 1.1e-06 57.0 67 41.8
ECA232G0460 Erigeron canadensis HOM05D001198 ORTHO05D001599 1.4e-06 56.6 30 83.3
Zm00001eb190190 Zea mays HOM05D001198 ORTHO05D001599 3.1e-06 55.5 38 57.9
unitig_736.g22289 Utricularia gibba HOM05D001198 ORTHO05D001599 4.0e-06 55.1 37 59.5
vmacro06079 Vaccinium macrocarpon HOM05D001198 ORTHO05D001599 6.8e-06 54.3 76 39.5


User provided reference genes

Program Settings