Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 3.0e-57 224.9 112 100.0
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.6e-21 106.3 62 80.6
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 4.2e-19 98.2 62 74.2
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 5.2e-17 91.3 105 49.5
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 5.2e-17 91.3 59 71.2
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 4.8e-15 84.7 59 71.2
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 1.1e-14 83.6 63 71.4
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 1.8e-14 82.8 62 66.1
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 9.1e-14 80.5 61 62.3
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 1.6e-13 79.7 61 60.7
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 2.2e-12 75.9 46 76.1
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.5e-11 73.2 47 74.5
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 3.2e-11 72.0 59 62.7
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 5.5e-11 71.2 59 66.1
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 7.2e-11 70.9 49 69.4
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.2e-10 70.1 48 66.7
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 1.2e-10 70.1 51 68.6
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.2e-10 70.1 46 73.9
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 1.2e-10 70.1 63 58.7
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 1.2e-10 70.1 46 67.4
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 1.6e-10 69.7 45 68.9
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.1e-10 69.3 46 71.7
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.1e-10 69.3 46 71.7
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 2.1e-10 69.3 63 58.7
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 2.7e-10 68.9 59 61.0
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 3.6e-10 68.6 59 61.0
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 6.1e-10 67.8 46 69.6
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 6.1e-10 67.8 59 59.3
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 6.1e-10 67.8 46 69.6
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 6.1e-10 67.8 49 67.3
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 6.1e-10 67.8 49 67.3
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 6.1e-10 67.8 46 69.6
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 8.0e-10 67.4 46 69.6
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.4e-09 66.6 56 58.9
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.4e-09 66.6 56 58.9
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.4e-09 66.6 52 67.3
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 1.8e-09 66.2 54 61.1
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.8e-09 66.2 49 63.3
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 2.3e-09 65.9 46 69.6
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 3.0e-09 65.5 49 61.2
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 3.0e-09 65.5 62 54.8
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 5.2e-09 64.7 84 45.2
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 5.2e-09 64.7 56 57.1
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 8.8e-09 63.9 61 59.0
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 8.8e-09 63.9 41 73.2
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 8.8e-09 63.9 40 75.0
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.2e-08 63.5 39 76.9
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.5e-08 63.2 50 58.0
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.5e-08 63.2 50 58.0
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 1.5e-08 63.2 59 54.2
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.5e-08 63.2 46 63.0
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 2.0e-08 62.8 40 70.0
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 2.6e-08 62.4 55 56.4
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.6e-08 62.4 39 76.9
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.6e-08 62.4 46 63.0
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 3.4e-08 62.0 46 63.0
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 5.7e-08 61.2 46 63.0
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 1.3e-07 60.1 46 63.0
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 1.7e-07 59.7 46 60.9
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 1.7e-07 59.7 46 58.7
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 2.2e-07 59.3 44 65.9
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 2.2e-07 59.3 51 58.8
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 2.8e-07 58.9 40 70.0
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 2.8e-07 58.9 49 55.1
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 2.8e-07 58.9 48 56.2
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 2.8e-07 58.9 46 56.5
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 3.7e-07 58.5 44 59.1
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 3.7e-07 58.5 46 58.7
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 3.7e-07 58.5 48 56.2
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 3.7e-07 58.5 46 56.5
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 3.7e-07 58.5 46 56.5
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 6.3e-07 57.8 46 56.5
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 6.3e-07 57.8 46 60.9
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 8.3e-07 57.4 46 60.9
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 1.1e-06 57.0 58 56.9
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.4e-06 56.6 48 52.1
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.8e-06 56.2 48 56.2
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.8e-06 56.2 46 58.7
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.8e-06 56.2 46 58.7
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 3.1e-06 55.5 45 57.8
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 3.1e-06 55.5 48 52.1
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 3.1e-06 55.5 46 56.5
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 3.1e-06 55.5 55 52.7
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 4.1e-06 55.1 48 56.2
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 5.4e-06 54.7 45 57.8
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 5.4e-06 54.7 37 67.6
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 7.0e-06 54.3 44 59.1
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 7.0e-06 54.3 44 59.1


User provided reference genes

Program Settings