Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.2e-147 526.6 279 100.0
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 1.4e-127 459.9 282 80.9
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.2e-126 456.8 279 79.6
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 1.5e-126 456.4 279 81.4
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.7e-125 453.0 283 80.2
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 2.7e-123 445.7 279 77.4
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 7.3e-121 437.6 279 76.7
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.4e-118 428.7 279 74.2
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 4.4e-118 428.3 234 87.6
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 7.6e-118 427.6 283 73.9
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 1.1e-116 423.7 279 76.3
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.9e-116 422.9 279 73.8
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.9e-116 422.9 279 74.6
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.2e-115 420.2 280 73.2
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.7e-114 416.4 248 81.0
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.7e-114 416.4 281 73.0
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 2.3e-114 416.0 279 72.0
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.1e-113 413.7 248 80.6
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.5e-113 412.5 282 73.0
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 4.3e-113 411.8 286 71.7
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 7.3e-113 411.0 240 80.8
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-112 410.2 279 71.3
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.6e-112 409.8 246 79.7
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.8e-112 409.1 246 79.7
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 2.8e-112 409.1 246 78.0
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.1e-111 407.1 283 71.4
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.1e-111 407.1 246 77.2
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.1e-111 407.1 277 71.8
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.8e-111 406.4 279 70.3
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 4.0e-111 405.2 279 70.3
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 9.0e-111 404.1 248 79.0
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 9.0e-111 404.1 279 69.2
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.2e-110 403.7 279 69.9
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.5e-110 403.3 279 68.8
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 2.0e-110 402.9 279 68.5
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 2.0e-110 402.9 284 71.1
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.6e-110 402.5 279 69.9
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 2.6e-110 402.5 281 70.1
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 4.5e-110 401.7 246 75.2
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 5.8e-110 401.4 279 69.2
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 9.9e-110 400.6 279 69.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-109 400.2 280 70.7
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.3e-109 400.2 279 68.8
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.3e-109 400.2 247 78.1
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 2.2e-109 399.4 281 69.0
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 4.9e-109 398.3 279 68.5
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 4.9e-109 398.3 279 69.2
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 6.4e-109 397.9 279 68.5
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 6.4e-109 397.9 279 68.1
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 8.4e-109 397.5 279 69.2
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 8.4e-109 397.5 279 67.7
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.1e-108 397.1 234 79.1
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.1e-108 397.1 234 79.1
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.4e-108 396.7 279 69.5
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-108 396.7 279 69.9
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.9e-108 396.4 234 79.9
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.2e-108 395.2 279 69.9
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.2e-108 395.2 279 69.9
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 5.4e-108 394.8 279 74.2
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.2e-107 393.7 282 70.2
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.7e-107 392.5 280 69.3
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 3.5e-107 392.1 279 67.4
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 3.5e-107 392.1 280 67.5
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.6e-107 391.7 280 69.3
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.8e-106 389.8 279 67.7
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 3.0e-106 389.0 230 80.0
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.9e-106 388.7 280 68.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 5.1e-106 388.3 279 67.4
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 5.1e-106 388.3 232 78.9
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 6.7e-106 387.9 283 67.5
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 8.7e-106 387.5 246 76.4
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.1e-105 387.1 247 74.9
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.5e-105 386.0 234 77.8
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 5.6e-105 384.8 279 66.7
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 5.6e-105 384.8 284 66.5
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 1.6e-104 383.3 278 69.1
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 2.1e-104 382.9 239 74.1
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 2.8e-104 382.5 246 72.8
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.1e-103 380.6 237 79.3
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.4e-103 380.2 279 65.9
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 1.8e-103 379.8 278 68.3
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 2.4e-103 379.4 281 64.1
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 4.0e-103 378.6 284 64.4
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 5.3e-103 378.3 284 64.4
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.3e-103 378.3 279 65.6
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 5.3e-103 378.3 279 65.6
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 5.3e-103 378.3 280 67.9
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 9.0e-103 377.5 286 67.1
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.4e-102 375.6 279 65.6
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 5.8e-102 374.8 282 67.0
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.3e-101 373.6 279 65.9
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.3e-101 373.6 233 77.3
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.7e-101 373.2 287 63.8
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 6.4e-101 371.3 246 70.7
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-100 370.5 287 62.4
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 4.2e-100 368.6 281 70.5
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 4.2e-100 368.6 246 71.5
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 9.3e-100 367.5 287 61.7
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 2.7e-99 365.9 287 61.3
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 7.9e-99 364.4 287 62.0
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 7.9e-99 364.4 279 62.0
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.0e-98 364.0 288 62.5
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.0e-98 364.0 288 62.5
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.0e-98 364.0 287 61.7
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.3e-98 363.6 287 62.0
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-98 363.2 287 62.0
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 3.9e-98 362.1 287 62.0
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.9e-98 362.1 279 63.8
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 6.7e-98 361.3 288 60.8
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 6.7e-98 361.3 288 61.8
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 8.7e-98 360.9 287 61.0
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.1e-97 360.5 287 61.7
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.5e-97 360.1 287 59.9
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 1.5e-97 360.1 280 61.8
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.5e-97 360.1 280 61.8
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 4.3e-97 358.6 288 60.8
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 4.3e-97 358.6 288 59.0
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 5.6e-97 358.2 279 61.3
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.3e-96 357.1 290 59.0
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.1e-96 356.3 290 59.3
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 2.8e-96 355.9 289 59.2
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 2.8e-96 355.9 289 59.2
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 3.7e-96 355.5 310 58.4
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 3.7e-96 355.5 290 58.6
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 3.7e-96 355.5 290 58.6
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 6.2e-96 354.8 264 64.4
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 8.1e-96 354.4 290 58.3
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-95 353.2 290 58.6
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-95 353.2 289 58.5
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.8e-95 353.2 290 58.6
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 5.3e-95 351.7 289 58.5
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.5e-94 350.1 235 68.5
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 5.8e-94 348.2 290 58.3
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.0e-93 347.4 278 60.4
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.1e-91 339.7 246 68.7
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 3.5e-91 339.0 281 58.4
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.0e-90 337.4 279 60.2
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 5.7e-89 331.6 236 65.7
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 4.8e-88 328.6 287 56.8
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 4.1e-87 325.5 238 64.3
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.1e-84 317.4 185 81.6
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.6e-83 312.4 234 65.4
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 4.6e-83 312.0 233 63.9
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.3e-82 310.5 234 65.0
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.9e-82 308.9 250 61.2
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 5.3e-79 298.5 222 60.4
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 5.3e-79 298.5 291 52.9
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 2.6e-78 296.2 283 53.7
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.5e-73 280.4 198 66.2
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 1.7e-72 276.9 240 54.6
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 7.2e-68 261.5 195 62.1
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 9.1e-63 244.6 162 71.6
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 2.6e-62 243.0 186 62.4
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 4.5e-62 242.3 235 47.7
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.9e-60 236.9 152 73.7
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 8.8e-58 228.0 161 67.7
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 5.7e-57 225.3 281 40.9
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.7e-54 216.5 161 65.8
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.7e-51 206.5 249 46.2
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 3.4e-49 199.5 205 48.8
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.1e-43 178.7 134 64.2
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 1.4e-42 177.6 235 37.9
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.6e-35 154.1 142 52.8
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 2.8e-35 153.3 142 53.5
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 2.8e-35 153.3 142 53.5
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 4.1e-23 112.8 119 46.2
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-23 112.5 117 42.7
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.2e-18 95.9 74 58.1
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 6.8e-18 95.5 186 33.9


User provided reference genes

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