Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 9.2e-147 523.5 252 100.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 4.9e-132 474.6 252 88.1
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 3.5e-130 468.4 252 87.7
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.2e-119 433.3 252 81.7
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 5.8e-117 424.5 252 79.4
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 5.8e-117 424.5 252 79.0
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 2.9e-116 422.2 252 81.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.1e-115 420.2 252 78.6
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 8.4e-108 394.0 258 77.5
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 3.1e-102 375.6 241 74.7
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 4.9e-100 368.2 257 68.9
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.4e-99 365.9 209 79.9
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 2.4e-99 365.9 218 77.5
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 5.4e-99 364.8 209 80.4
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.2e-98 363.6 223 76.7
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 4.6e-98 361.7 254 68.9
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 7.9e-98 360.9 256 68.8
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.0e-97 360.5 223 74.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.0e-97 360.5 219 76.3
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 3.9e-97 358.6 260 66.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.1e-96 357.1 255 67.8
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-96 357.1 255 67.8
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.1e-96 357.1 245 71.0
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.5e-96 356.7 256 67.6
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 3.3e-96 355.5 220 74.5
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 4.3e-96 355.1 256 67.6
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.3e-96 355.1 227 73.6
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 4.3e-96 355.1 253 66.8
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 5.6e-96 354.8 213 75.1
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.1e-95 352.8 250 68.8
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.1e-95 352.8 250 68.8
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 3.7e-95 352.1 220 73.2
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 3.7e-95 352.1 219 75.8
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 4.8e-95 351.7 207 74.9
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 6.2e-95 351.3 209 77.5
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 6.2e-95 351.3 217 74.2
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 8.1e-95 350.9 212 75.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.1e-94 350.5 258 66.3
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.4e-94 350.1 252 68.7
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.4e-94 350.1 222 74.8
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.8e-94 349.7 226 73.0
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.8e-94 349.7 226 73.0
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.8e-94 349.7 226 73.0
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.8e-94 349.7 212 74.5
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.4e-94 349.4 199 80.4
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 2.4e-94 349.4 246 67.5
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 4.0e-94 348.6 252 68.3
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 4.0e-94 348.6 208 77.4
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 5.3e-94 348.2 257 65.8
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 5.3e-94 348.2 246 66.7
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 5.8e-93 344.7 253 66.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 2.2e-92 342.8 211 75.8
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.8e-92 342.0 202 74.8
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 3.8e-92 342.0 211 73.9
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.8e-92 342.0 207 72.9
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 6.4e-92 341.3 202 77.2
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 6.4e-92 341.3 251 65.7
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 8.4e-92 340.9 211 74.4
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-91 340.1 202 76.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.4e-91 340.1 211 74.4
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.9e-91 339.7 202 76.2
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.9e-91 339.7 202 76.2
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.9e-91 339.7 200 77.0
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.5e-91 339.3 202 76.2
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 2.5e-91 339.3 211 74.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 3.2e-91 339.0 202 76.2
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 4.2e-91 338.6 209 73.7
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.5e-91 338.2 202 76.7
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 5.5e-91 338.2 219 72.1
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.5e-91 338.2 209 74.6
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.6e-90 336.7 206 73.8
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.6e-90 336.7 206 73.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.6e-90 336.7 205 75.6
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 1.6e-90 336.7 196 77.6
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 2.7e-90 335.9 202 73.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.5e-90 335.5 202 75.2
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.6e-90 335.1 207 74.4
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.6e-90 335.1 224 70.5
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 6.0e-90 334.7 206 73.8
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.8e-89 333.2 226 69.5
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 2.3e-89 332.8 220 70.0
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 3.0e-89 332.4 206 73.3
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.9e-89 332.0 222 69.4
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.1e-88 330.5 241 65.6
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.9e-88 329.7 202 74.8
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.5e-88 329.3 202 73.3
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 9.6e-88 327.4 204 74.5
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 9.6e-88 327.4 198 75.3
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-87 327.0 202 74.8
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.3e-87 327.0 223 70.0
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.8e-87 325.9 201 74.1
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.8e-87 325.9 219 68.0
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.7e-87 325.5 198 73.7
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 3.7e-87 325.5 224 70.1
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 4.0e-86 322.0 201 73.1
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 4.0e-86 322.0 201 73.1
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.3e-86 321.6 267 59.6
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 6.9e-86 321.2 201 73.6
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 7.6e-85 317.8 188 75.5
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.1e-83 313.9 202 69.8
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.2e-82 310.5 241 65.6
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.3e-81 307.0 172 81.4
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 8.7e-81 304.3 306 52.0
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.1e-80 303.9 205 65.9
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.5e-80 302.8 222 66.7
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.4e-78 296.2 148 95.3
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 3.8e-76 288.9 213 61.5
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.7e-68 263.5 169 71.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 8.5e-68 261.2 282 49.6
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.6e-64 249.6 136 84.6
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.4e-64 248.8 261 52.1
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.7e-63 246.9 173 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 8.5e-60 234.6 195 55.9
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 4.7e-58 228.8 119 93.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 2.3e-57 226.5 206 53.4
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 6.7e-57 224.9 193 51.8
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 3.3e-56 222.6 146 69.9
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 4.8e-55 218.8 203 53.2
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 5.2e-49 198.7 154 61.7
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 2.4e-46 189.9 181 46.4
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 5.3e-46 188.7 169 56.2
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 9.1e-46 188.0 197 48.7
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.0e-44 184.5 106 81.1
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 3.8e-44 182.6 118 68.6
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.5e-43 180.6 99 88.9
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 2.1e-42 176.8 135 63.7
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 6.8e-41 171.8 99 79.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-40 171.0 99 82.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.8e-38 163.7 100 72.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.8e-38 163.7 97 80.4
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.1e-34 150.2 87 83.9
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 1.3e-31 141.0 83 84.3
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 6.3e-31 138.7 84 69.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.7e-29 133.3 84 65.5
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 4.3e-27 125.9 170 43.5
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.0e-25 121.3 77 76.6
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.0e-25 121.3 89 67.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.0e-25 121.3 89 67.4
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.4e-25 120.9 89 68.5
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.4e-25 120.9 92 67.4
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 3.1e-25 119.8 184 34.8
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 6.8e-25 118.6 88 68.2
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 6.8e-25 118.6 101 53.5
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.2e-23 113.6 102 58.8
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.0e-20 104.8 72 63.9
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 1.2e-18 97.8 182 32.4
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 2.2e-15 87.0 106 48.1
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.2e-13 81.3 48 79.2
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.1e-13 80.5 44 84.1
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.1e-13 80.5 44 84.1
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 2.7e-13 80.1 117 31.6
Medtr1g097880 Medicago truncatula HOM05D004920 ORTHO05D005998 1.0e-12 78.2 88 51.1
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 7.3e-11 72.0 55 63.6
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.2e-10 71.2 56 64.3
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.6e-10 70.9 71 40.8
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 2.1e-10 70.5 42 78.6
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.1e-09 66.6 35 85.7
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 3.1e-09 66.6 35 85.7
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.2e-09 65.9 40 75.0
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.2e-08 64.7 77 40.3
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 2.6e-08 63.5 55 45.5
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 5.4e-06 55.8 40 50.0


User provided reference genes

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