Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 3.4e-222 774.6 380 100.0
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 9.4e-196 686.8 347 95.7
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 6.1e-195 684.1 343 96.8
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.4e-194 682.9 355 93.8
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 5.2e-194 681.0 347 95.7
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.4e-186 656.4 343 92.1
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 3.0e-186 655.2 344 90.4
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.3e-184 649.8 344 90.4
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.1e-183 646.7 344 90.1
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.8e-183 646.0 344 89.8
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-180 636.3 343 87.8
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 4.3e-180 634.8 343 87.5
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 2.8e-179 632.1 342 87.7
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 3.4e-177 625.2 338 87.6
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 8.3e-176 620.5 348 84.5
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 1.4e-175 619.8 345 84.9
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 1.4e-175 619.8 354 83.3
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.8e-175 619.4 354 82.5
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 4.1e-175 618.2 342 85.4
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.6e-174 616.3 354 81.9
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.0e-174 615.9 342 85.1
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 3.5e-174 615.1 343 84.5
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 4.6e-174 614.8 342 85.4
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 4.6e-174 614.8 343 84.8
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 7.8e-174 614.0 347 83.6
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.0e-173 613.6 350 82.9
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.3e-173 613.2 346 83.2
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.7e-173 612.8 343 83.7
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 8.6e-173 610.5 344 84.3
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.9e-172 609.4 349 83.4
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 5.6e-172 607.8 344 82.6
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 5.6e-172 607.8 344 82.6
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 5.6e-172 607.8 358 79.9
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 5.6e-172 607.8 344 82.8
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 7.3e-172 607.4 343 83.7
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 9.5e-172 607.1 345 82.0
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 9.5e-172 607.1 342 83.9
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.6e-171 606.3 347 82.4
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.6e-171 606.3 342 85.1
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 2.8e-171 605.5 342 83.9
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 3.6e-171 605.1 347 82.4
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 4.7e-171 604.7 358 80.7
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 8.0e-171 604.0 345 81.4
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 8.0e-171 604.0 342 82.7
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 8.0e-171 604.0 341 84.5
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 1.1e-170 603.6 346 81.2
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.1e-170 603.6 343 84.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.8e-170 602.8 345 81.4
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 3.1e-170 602.1 357 80.7
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 5.2e-170 601.3 358 79.1
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 5.2e-170 601.3 344 81.4
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 5.2e-170 601.3 341 83.3
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.2e-169 600.1 360 79.2
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.2e-169 600.1 343 82.2
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.0e-169 599.4 352 79.3
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.4e-169 598.6 364 78.8
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.4e-169 598.6 364 78.8
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 5.8e-169 597.8 347 81.8
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 9.8e-169 597.0 354 79.7
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.3e-168 596.7 342 82.2
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.7e-168 596.3 358 78.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.2e-168 595.9 351 79.2
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 2.9e-168 595.5 345 80.9
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 4.9e-168 594.7 347 80.1
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 4.9e-168 594.7 342 81.9
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 8.3e-168 594.0 347 79.0
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.1e-167 593.6 342 80.7
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.1e-167 593.6 345 80.0
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.1e-167 593.6 344 81.4
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.1e-167 591.7 347 79.8
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 5.4e-167 591.3 360 79.7
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 7.0e-167 590.9 348 79.6
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 2.0e-166 589.3 345 79.7
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.7e-166 589.0 340 81.8
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.0e-166 587.8 345 80.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 7.8e-166 587.4 357 78.4
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 7.8e-166 587.4 356 79.5
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.7e-165 586.3 354 80.2
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 2.3e-165 585.9 348 80.7
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 1.1e-164 583.6 356 77.8
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 1.5e-164 583.2 344 78.8
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.9e-164 582.8 342 79.2
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.9e-164 582.8 341 78.9
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.6e-163 579.7 349 77.9
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 4.7e-163 578.2 341 79.8
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.1e-162 577.0 348 79.3
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 3.1e-162 575.5 343 78.7
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 8.9e-162 573.9 342 80.4
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.2e-161 573.5 307 89.9
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 2.6e-161 572.4 341 78.9
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.4e-161 572.0 392 70.9
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.3e-160 570.1 347 78.1
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 2.2e-160 569.3 323 83.3
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 3.7e-160 568.5 341 78.6
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.9e-159 566.2 352 77.3
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.4e-159 565.8 342 78.7
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 9.2e-159 563.9 359 76.3
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 4.3e-156 555.1 340 76.8
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 9.5e-156 553.9 431 65.7
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 8.9e-154 547.4 369 72.1
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.2e-153 547.0 364 74.2
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 1.1e-151 540.4 445 62.5
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 7.1e-151 537.7 341 73.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.7e-144 516.5 343 73.5
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.7e-144 516.5 341 73.9
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.4e-143 513.5 371 67.1
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 8.1e-139 497.7 339 70.8
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 2.0e-137 493.0 342 71.6
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 6.0e-134 481.5 272 83.5
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.9e-128 462.6 330 66.4
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.0e-125 452.6 256 82.8
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.4e-122 443.7 253 81.8
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 4.0e-122 442.2 343 64.7
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.6e-118 430.3 339 61.1
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.3e-116 422.2 382 58.9
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.2e-115 419.9 313 67.7
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.2e-115 419.9 313 67.7
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 7.7e-113 411.4 231 81.8
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 6.1e-110 401.7 228 82.9
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 6.3e-107 391.7 364 52.5
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.2e-103 379.4 318 62.3
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 4.2e-103 379.0 344 59.3
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 7.2e-103 378.3 245 73.5
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 9.7e-100 367.9 342 54.7
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 2.1e-94 350.1 339 52.8
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 2.0e-92 343.6 254 68.9
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 8.5e-88 328.2 195 81.5
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 3.7e-83 312.8 190 78.4
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 3.2e-79 299.7 170 81.8
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 5.2e-77 292.4 217 69.6
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 2.3e-61 240.4 157 73.9
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 8.6e-56 221.9 146 74.0
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 2.3e-53 213.8 116 83.6
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.3e-51 208.0 117 82.1
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.3e-51 208.0 340 39.4
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 3.7e-43 179.9 94 91.5
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 4.6e-41 172.9 99 80.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 5.1e-40 169.5 276 41.3
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.3e-39 166.8 358 34.1
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-24 118.2 81 77.8
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.6e-23 112.8 95 58.9
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 4.0e-21 106.7 255 31.8
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.7e-19 101.3 169 40.2
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 8.4e-19 99.0 87 60.9
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 8.7e-16 89.0 45 91.1
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.9e-11 73.9 47 68.1


User provided reference genes

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