Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 5.7e-129 464.5 286 100.0
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.7e-101 373.2 290 83.8
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 4.3e-68 262.3 312 63.8
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 3.1e-66 256.1 313 53.7
VMungo1127G1338 Vigna mungo HOM05D010177 ORTHO05D003109 6.7e-61 238.4 318 59.7
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 1.9e-60 236.9 331 50.8
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 1.8e-58 230.3 317 49.8
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.7e-56 223.8 329 50.8
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 2.3e-53 213.4 341 53.7
Medtr4g046123 Medicago truncatula HOM05D010177 ORTHO05D003109 1.4e-39 167.5 371 44.2
TPR.G21670 Trifolium pratense HOM05D010177 ORTHO05D003109 7.0e-34 148.7 300 47.7
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 3.2e-31 139.8 287 40.8
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 4.0e-29 132.9 292 41.8
Medtr2g090150 Medicago truncatula HOM05D010177 ORTHO05D003109 1.1e-26 124.8 308 43.8
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 1.0e-24 118.2 302 37.4
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 1.5e-23 114.4 308 37.3
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 3.2e-23 113.2 315 38.1
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 1.6e-22 110.9 303 37.6
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.7e-22 110.2 298 36.2
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 3.0e-21 106.7 317 36.9
Glyma.U031322 Glycine max HOM05D010177 ORTHO05D003109 4.0e-21 106.3 292 37.7
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 2.0e-20 104.0 328 33.8
Phvul.005G106600 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 1.7e-19 100.9 291 35.7
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 2.2e-19 100.5 315 40.0
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 4.8e-19 99.4 302 39.1
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 6.3e-19 99.0 276 42.4
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.4e-18 97.1 323 31.9
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.5e-17 93.2 309 36.2
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.9e-16 90.1 241 33.6
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 5.0e-16 89.4 243 34.6
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 7.2e-15 85.5 330 36.7
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 7.2e-15 85.5 293 39.6
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 9.5e-15 85.1 290 39.3
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.5e-15 85.1 305 33.8
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.5e-15 85.1 305 33.8
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.1e-14 84.0 336 32.1
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.1e-14 84.0 269 36.4
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 8.0e-14 82.0 307 31.3
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 8.0e-14 82.0 316 34.2
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.0e-13 81.6 322 32.3
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 3.0e-13 80.1 305 39.7
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 6.8e-13 79.0 307 30.9
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 6.8e-13 79.0 320 35.9
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 6.8e-13 79.0 331 32.0
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 8.8e-13 78.6 279 35.1
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 3.4e-12 76.6 301 30.9
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 4.4e-12 76.3 271 38.0
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 7.5e-12 75.5 324 30.6
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 9.8e-12 75.1 196 36.7
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 9.8e-12 75.1 279 34.8
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 2.2e-11 73.9 265 35.1
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.7e-11 73.2 256 29.3
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 4.9e-11 72.8 323 31.0
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.4e-10 71.2 266 39.5
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 2.4e-10 70.5 318 29.9
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 5.4e-10 69.3 324 29.3
Prupe.3G233700 Prunus persica HOM05D010652 ORTHO05D003109 5.4e-10 69.3 304 34.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 9.2e-10 68.6 302 28.8
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 2.0e-09 67.4 336 28.9
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 2.7e-09 67.0 313 29.7
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 3.5e-09 66.6 304 30.6
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 3.5e-09 66.6 335 35.5
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.5e-09 66.2 268 35.1
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 5.9e-09 65.9 270 33.7
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 5.9e-09 65.9 273 34.8
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 7.8e-09 65.5 310 31.3
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 7.8e-09 65.5 335 30.7
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 7.8e-09 65.5 313 28.4
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.0e-08 65.1 305 33.1
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.0e-08 65.1 269 37.9
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.0e-08 65.1 269 37.9
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.0e-08 65.1 286 31.1
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 1.0e-08 65.1 215 34.9
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 1.3e-08 64.7 314 31.2
TPR.G40438 Trifolium pratense HOM05D010177 ORTHO05D003109 1.3e-08 64.7 177 39.5
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.7e-08 64.3 293 35.8
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.7e-08 64.3 311 29.3
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.7e-08 64.3 299 31.1
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.7e-08 64.3 299 31.1
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.3e-08 63.9 331 28.4
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 2.9e-08 63.5 318 28.9
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 2.9e-08 63.5 320 30.3
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 3.8e-08 63.2 332 34.6
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 3.8e-08 63.2 283 33.9
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 5.0e-08 62.8 311 29.9
PGR142G1157 Punica granatum HOM05D010652 ORTHO05D003109 5.0e-08 62.8 286 31.8
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 6.6e-08 62.4 311 29.6
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 8.6e-08 62.0 268 34.7
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.1e-07 61.6 310 28.1
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 3.3e-07 60.1 265 33.6
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 3.3e-07 60.1 278 32.4
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 4.3e-07 59.7 196 37.2
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 4.3e-07 59.7 345 30.1
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 5.6e-07 59.3 267 31.1
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.3e-07 58.9 325 28.9
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 9.5e-07 58.5 334 28.7
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 1.2e-06 58.2 268 33.6
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.6e-06 57.8 304 29.6
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 2.8e-06 57.0 330 27.6
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 2.8e-06 57.0 156 38.5
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 2.8e-06 57.0 330 29.7
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 3.6e-06 56.6 308 28.6
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.6e-06 56.6 329 28.3
AL7G24420 Arabidopsis lyrata HOM05D012054 ORTHO05D013946 4.7e-06 56.2 293 33.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 6.1e-06 55.8 307 27.0
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 6.1e-06 55.8 320 29.1
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 8.0e-06 55.5 299 28.1


User provided reference genes

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