Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 7.2e-213 743.8 418 100.0
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 1.6e-196 689.5 418 88.5
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 3.0e-179 632.1 418 84.0
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 3.0e-171 605.5 418 76.3
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 4.7e-148 528.5 435 66.0
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 1.9e-141 506.5 433 63.7
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 3.5e-135 485.7 429 63.2
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 2.3e-134 483.0 431 62.4
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 1.6e-127 460.3 499 54.3
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 1.3e-126 457.2 497 54.7
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 7.1e-120 434.9 390 62.6
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 7.1e-112 408.3 394 68.3
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 6.3e-92 342.0 436 49.1
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 2.7e-87 326.6 437 47.6
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 1.1e-85 321.2 436 47.0
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 1.1e-85 321.2 436 52.3
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 6.9e-83 312.0 435 44.8
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 8.8e-78 295.0 443 50.1
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 5.9e-74 282.3 423 40.4
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.2e-73 280.4 438 48.9
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 1.6e-71 274.2 446 41.7
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 2.6e-69 266.9 437 39.8
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 9.7e-69 265.0 436 39.4
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 1.3e-68 264.6 436 40.1
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 1.7e-68 264.2 437 40.0
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 1.7e-68 264.2 452 39.2
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 8.2e-68 261.9 438 45.7
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 1.8e-67 260.8 455 40.9
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 6.5e-65 252.3 381 42.0
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 1.1e-64 251.5 419 40.8
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 3.6e-63 246.5 432 44.4
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 4.7e-63 246.1 428 39.7
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 5.7e-61 239.2 419 45.1
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 3.1e-59 233.4 433 44.6
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 5.9e-58 229.2 435 38.9
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 9.5e-56 221.9 433 44.6
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.6e-55 221.1 419 37.2
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 8.0e-55 218.8 439 36.9
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.2e-53 214.9 454 36.8
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 2.8e-52 210.3 284 43.7
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 1.4e-51 208.0 442 40.0
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 1.8e-51 207.6 449 33.4
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 4.1e-51 206.5 497 33.2
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 4.1e-51 206.5 367 38.7
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 2.0e-50 204.1 429 36.6
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 2.7e-50 203.8 435 35.2
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 4.5e-50 203.0 453 38.9
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.7e-49 201.1 436 36.0
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.3e-49 200.7 447 35.1
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 3.8e-49 199.9 442 34.4
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 1.1e-48 198.4 452 37.6
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 1.1e-48 198.4 425 37.6
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 1.5e-48 198.0 399 37.6
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 5.6e-48 196.1 454 33.9
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 1.2e-45 188.3 456 39.7
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 1.5e-45 188.0 455 34.9
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.8e-43 181.0 294 40.8
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 4.1e-43 179.9 380 33.7
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 6.0e-42 176.0 453 34.2
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 7.8e-42 175.6 442 32.4
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 1.3e-41 174.9 436 32.6
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 2.3e-41 174.1 341 37.5
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 2.3e-41 174.1 442 31.7
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.5e-40 171.4 461 33.0
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 4.3e-40 169.9 393 33.6
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 7.3e-40 169.1 393 41.5
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 2.8e-39 167.2 445 32.8
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 6.2e-39 166.0 452 32.3
Ca_27661_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 8.0e-39 165.6 145 62.1
Ca_27662_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 8.0e-39 165.6 145 62.1
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 2.3e-38 164.1 549 29.5
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 2.3e-38 164.1 438 32.2
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-37 161.0 320 37.5
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.4e-37 159.8 392 34.2
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 5.8e-37 159.5 422 32.0
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 4.9e-36 156.4 395 33.7
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 8.3e-36 155.6 437 30.7
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 4.1e-35 153.3 471 32.5
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 7.0e-35 152.5 387 32.6
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 2.1e-34 151.0 424 31.1
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 6.0e-34 149.4 422 30.3
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 2.3e-33 147.5 212 38.7
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 2.3e-33 147.5 139 56.8
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 5.0e-33 146.4 430 30.5
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 6.6e-33 146.0 429 31.2
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 1.9e-32 144.4 342 41.5
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 4.3e-32 143.3 302 36.8
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 2.8e-31 140.6 510 30.6
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 2.3e-30 137.5 362 29.3
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 4.0e-30 136.7 489 29.2
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 5.2e-30 136.3 437 28.4
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 2.6e-29 134.0 428 29.0
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 5.8e-29 132.9 335 31.6
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 9.9e-29 132.1 434 28.6
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 2.4e-27 127.5 430 28.6
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 2.4e-27 127.5 432 28.7
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 2.3e-25 120.9 429 34.0
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 2.3e-25 120.9 430 28.1
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 2.3e-25 120.9 528 25.0
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 2.3e-25 120.9 375 28.3
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 8.6e-25 119.0 348 32.5
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.1e-23 114.4 88 62.5
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 2.8e-23 114.0 430 28.1
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 6.2e-23 112.8 426 25.6
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 1.8e-22 111.3 394 32.5
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 3.4e-21 107.1 308 30.5
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 7.6e-21 105.9 451 26.4
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 2.2e-20 104.4 440 27.5
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 4.3e-16 90.1 148 41.9
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 4.0e-14 83.6 286 28.7
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 2.6e-13 80.9 383 25.8
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 4.9e-12 76.6 292 27.4
TPR.G1791 Trifolium pratense HOM05D005864 ORTHO05D006770 6.4e-12 76.3 48 79.2
CDE05G1677 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 6.0e-10 69.7 49 63.3
RcHm_v2.0_Chr2g0160061 Rosa chinensis HOM05D005864 ORTHO05D006770 4.3e-08 63.5 199 32.7
Hund01249 Selenicereus undatus HOM05D005864 ORTHO05D006770 9.6e-08 62.4 132 37.1
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 3.6e-07 60.5 244 34.4
CSS0018090 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 1.4e-06 58.5 77 42.9
Lsat_1_v5_gn_9_59080 Lactuca sativa HOM05D005864 ORTHO05D006770 3.1e-06 57.4 54 55.6
TAR375G0046 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.1e-06 57.4 49 53.1
TAR372G0002 Trochodendron aralioides HOM05D005864 ORTHO05D006770 6.9e-06 56.2 49 53.1


User provided reference genes

Program Settings