Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 8.3e-194 680.2 358 100.0
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 2.5e-174 615.5 362 91.4
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 2.1e-157 559.3 361 83.4
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 3.1e-156 555.4 361 83.7
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 9.7e-126 454.1 372 69.9
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 1.5e-123 446.8 367 67.8
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 2.2e-117 426.4 385 63.6
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 1.4e-116 423.7 366 66.7
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 7.2e-105 384.8 397 57.7
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 5.9e-99 365.2 369 59.3
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 7.7e-99 364.8 368 58.7
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 1.0e-98 364.4 355 59.4
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 2.9e-98 362.8 360 58.1
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 5.0e-98 362.1 367 59.7
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 6.5e-98 361.7 378 58.2
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 2.8e-96 356.3 360 57.5
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 1.8e-95 353.6 369 56.1
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 8.9e-95 351.3 367 58.6
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 2.6e-94 349.7 363 57.9
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 1.7e-93 347.1 367 57.2
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 1.7e-93 347.1 371 56.1
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 2.2e-93 346.7 385 56.9
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.8e-92 343.6 366 56.8
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 2.9e-90 336.3 371 56.1
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 4.7e-88 328.9 361 56.2
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 8.0e-88 328.2 364 54.7
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 1.0e-87 327.8 370 54.9
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 4.0e-87 325.9 374 55.1
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 8.9e-87 324.7 370 53.0
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 2.0e-86 323.6 373 52.8
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 9.8e-86 321.2 373 52.5
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 1.3e-85 320.9 363 53.2
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 1.7e-85 320.5 365 54.5
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 8.3e-85 318.2 364 52.7
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 3.2e-84 316.2 364 52.2
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 4.6e-83 312.4 363 53.2
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 6.0e-83 312.0 360 53.1
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 1.3e-82 310.8 381 49.9
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 1.3e-82 310.8 381 49.9
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 2.3e-82 310.1 357 54.9
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 3.0e-82 309.7 371 52.0
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 5.0e-82 308.9 406 50.0
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 6.6e-82 308.5 363 52.6
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.1e-81 307.8 360 51.9
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 1.1e-81 307.8 362 53.3
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 2.5e-81 306.6 370 50.8
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 9.5e-81 304.7 368 51.1
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 9.5e-81 304.7 367 54.2
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 1.6e-80 303.9 368 50.8
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 2.1e-80 303.5 360 51.7
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 2.8e-80 303.1 358 51.7
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 1.1e-79 301.2 369 49.6
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 1.8e-79 300.4 367 52.6
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 1.2e-78 297.7 374 49.7
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 4.4e-78 295.8 378 50.0
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 5.8e-78 295.4 280 60.0
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 5.8e-78 295.4 360 50.3
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 2.2e-77 293.5 376 49.7
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 3.7e-77 292.7 376 49.7
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 3.7e-77 292.7 367 50.1
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 8.3e-77 291.6 376 49.5
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 1.1e-76 291.2 366 50.0
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.4e-76 290.8 278 60.8
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 2.4e-76 290.0 371 49.3
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 4.1e-76 289.3 452 44.7
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 5.0e-74 282.3 373 49.1
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 5.0e-74 282.3 273 56.4
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 1.2e-72 277.7 400 46.2
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 2.8e-72 276.6 399 46.4
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 1.4e-71 274.2 376 50.3
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 1.2e-70 271.2 230 62.6
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 2.0e-70 270.4 306 52.6
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 3.7e-69 266.2 249 59.4
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 5.4e-68 262.3 353 47.0
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.6e-67 260.8 273 54.6
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 2.5e-65 253.4 357 47.3
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 1.1e-63 248.1 366 45.1
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 2.4e-63 246.9 378 43.4
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 4.0e-63 246.1 312 50.6
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 4.4e-62 242.7 469 40.9
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 5.8e-62 242.3 232 59.5
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 1.3e-61 241.1 271 55.0
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 1.0e-58 231.5 231 52.8
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 3.9e-58 229.6 407 38.8
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 1.9e-57 227.3 246 51.2
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 3.3e-57 226.5 347 42.7
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 5.6e-57 225.7 370 40.5
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 9.6e-57 224.9 224 53.1
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 2.8e-56 223.4 286 48.6
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 1.4e-55 221.1 246 52.4
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 1.5e-54 217.6 369 43.4
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 4.9e-53 212.6 146 71.9
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 6.0e-51 205.7 375 37.9
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 1.7e-50 204.1 344 40.4
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 1.9e-49 200.7 266 48.1
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 3.3e-49 199.9 292 43.8
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 4.3e-49 199.5 243 51.0
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 2.1e-48 197.2 230 51.7
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 1.5e-46 191.0 387 38.5
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 2.2e-45 187.2 278 43.9
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 9.3e-44 181.8 233 48.9
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 4.6e-43 179.5 228 43.9
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 1.1e-41 174.9 379 36.1
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 4.3e-41 172.9 256 44.5
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 6.9e-39 165.6 383 35.8
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 1.6e-35 154.5 146 61.0
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 3.9e-34 149.8 287 42.2
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 2.4e-31 140.6 349 31.8
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 7.6e-30 135.6 217 46.1
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 2.9e-29 133.7 145 53.8
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 2.9e-29 133.7 145 53.8
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 5.1e-26 122.9 190 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 2.5e-25 120.6 234 37.6
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 3.7e-24 116.7 96 64.6
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 9.0e-23 112.1 90 63.3
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 1.2e-22 111.7 180 42.2
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 1.3e-21 108.2 285 30.5
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 2.0e-17 94.4 61 75.4
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 3.3e-17 93.6 92 58.7
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 1.2e-14 85.1 61 70.5
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 2.2e-13 80.9 93 51.6
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 3.3e-09 67.0 88 44.3
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 7.4e-09 65.9 71 53.5


User provided reference genes

Program Settings