Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 2.4e-165 585.5 302 100.0
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 2.8e-150 535.4 321 88.2
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.2e-116 423.7 321 68.8
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 5.9e-116 421.4 318 72.0
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.3e-112 409.5 320 70.3
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.2e-107 392.9 320 66.6
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 1.2e-105 387.1 326 66.6
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-103 380.6 326 64.4
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.2e-100 370.5 298 67.1
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 5.5e-98 361.7 322 61.2
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 6.1e-97 358.2 324 60.2
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.0e-96 357.5 320 60.3
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 5.2e-96 355.1 320 60.3
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 6.8e-96 354.8 318 62.9
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.2e-95 354.0 320 60.0
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 4.4e-95 352.1 314 60.2
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 5.7e-95 351.7 320 60.0
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 7.5e-95 351.3 318 60.1
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.0e-92 343.2 320 60.3
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 8.5e-91 337.8 318 57.9
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 3.2e-90 335.9 325 57.8
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 2.1e-89 333.2 305 59.7
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 3.6e-89 332.4 316 59.5
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 3.6e-89 332.4 321 56.7
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.5e-87 327.0 326 57.7
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.4e-87 325.5 320 56.2
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 7.5e-87 324.7 314 57.6
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.3e-86 323.9 318 56.6
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 4.9e-86 322.0 298 58.1
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 6.3e-86 321.6 318 56.3
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.8e-85 320.1 324 56.2
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 2.4e-85 319.7 281 60.9
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 3.1e-85 319.3 311 58.8
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 3.1e-85 319.3 294 58.8
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 1.6e-84 317.0 322 57.5
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 2.0e-84 316.6 285 58.6
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 3.5e-84 315.8 228 75.4
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 1.9e-82 310.1 289 58.5
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 1.6e-81 307.0 285 55.4
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.6e-81 307.0 266 61.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 4.0e-80 302.4 269 59.5
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.6e-79 299.7 323 52.9
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 4.4e-79 298.9 267 60.3
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 5.7e-79 298.5 326 53.1
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 1.3e-78 297.4 264 60.2
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 1.7e-78 297.0 320 54.4
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 4.9e-78 295.4 278 57.9
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 2.4e-77 293.1 296 51.7
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 5.4e-77 292.0 313 54.3
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.6e-76 290.4 311 54.0
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.7e-76 289.7 305 52.8
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.7e-76 289.7 266 56.4
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 3.5e-76 289.3 325 52.0
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 4.6e-76 288.9 304 53.3
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 5.9e-76 288.5 297 54.5
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 1.0e-75 287.7 277 56.7
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 1.0e-75 287.7 274 57.3
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 1.3e-75 287.3 277 56.7
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 5.0e-75 285.4 277 56.3
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 5.0e-75 285.4 277 56.3
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 6.6e-75 285.0 275 54.2
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 6.6e-75 285.0 274 55.5
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.5e-74 283.9 291 52.9
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 1.9e-74 283.5 316 51.9
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 2.5e-74 283.1 283 55.1
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 4.3e-74 282.3 322 49.1
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 9.5e-74 281.2 324 50.0
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 1.6e-73 280.4 319 52.0
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 2.6e-71 273.1 282 55.0
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.2e-70 270.0 305 51.5
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 2.9e-70 269.6 339 47.2
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 1.4e-69 267.3 283 54.4
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 6.0e-68 261.9 285 50.9
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.0e-67 261.2 263 53.6
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 1.1e-66 257.7 319 48.9
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 5.6e-66 255.4 262 54.2
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 9.5e-66 254.6 304 50.7
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 5.2e-64 248.8 275 53.8
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 8.9e-64 248.1 290 48.6
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.5e-63 247.3 260 50.4
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 7.5e-63 245.0 296 44.6
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 3.7e-62 242.7 293 49.5
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.4e-61 240.7 247 51.4
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 9.2e-61 238.0 424 36.3
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 3.5e-60 236.1 292 45.5
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 6.6e-59 231.9 275 45.1
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 8.6e-59 231.5 156 76.3
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 4.3e-58 229.2 294 46.9
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 5.6e-58 228.8 287 47.0
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 5.6e-58 228.8 161 72.0
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 3.6e-57 226.1 282 47.9
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 6.2e-57 225.3 279 49.1
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 8.1e-57 224.9 250 50.0
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 6.4e-54 215.3 206 56.3
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 8.4e-54 214.9 257 47.5
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 9.2e-53 211.5 153 71.9
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 4.6e-52 209.1 204 53.4
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 9.6e-50 201.4 131 74.0
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 6.2e-49 198.7 148 73.6
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.0e-48 196.1 263 43.3
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.2e-47 194.5 293 40.3
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.2e-47 194.5 265 46.4
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 9.6e-42 174.9 222 50.0
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.8e-41 172.6 103 80.6
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.7e-38 164.1 282 38.7
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 1.7e-38 164.1 174 52.3
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.2e-37 159.8 103 75.7
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 5.1e-35 152.5 90 84.4
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 6.6e-35 152.1 179 50.8
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 8.1e-33 145.2 162 47.5
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 1.4e-32 144.4 107 72.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 9.0e-32 141.7 269 33.1
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 2.9e-30 136.7 140 52.1
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.9e-30 136.7 216 38.9
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.9e-29 134.0 87 70.1
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 4.2e-29 132.9 131 54.2
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.5e-28 129.8 137 53.3
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 4.6e-20 102.8 72 70.8
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.8e-17 93.6 83 62.7
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-16 91.7 115 45.2
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 4.5e-15 86.3 82 59.8
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 3.5e-12 76.6 54 68.5
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 4.6e-12 76.3 105 42.9
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 4.3e-10 69.7 150 32.0
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 4.3e-10 69.7 68 60.3
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.6e-09 67.8 49 67.3
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.2e-09 67.4 90 45.6
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 3.7e-09 66.6 59 62.7
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 1.8e-08 64.3 101 39.6
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.8e-08 64.3 52 59.6
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 3.1e-08 63.5 77 46.8
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 4.1e-08 63.2 63 55.6
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.0e-06 58.5 90 34.4


User provided reference genes

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