Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 9.5e-95 350.1 173 100.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.2e-86 323.2 174 93.1
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.0e-72 276.9 173 79.2
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.3e-72 275.8 173 79.2
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 4.3e-71 271.6 173 75.7
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 9.0e-69 263.8 173 75.1
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 2.0e-68 262.7 173 75.1
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 2.9e-67 258.8 173 74.0
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 3.8e-67 258.5 173 75.1
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.3e-62 243.4 176 68.2
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.6e-62 243.0 174 72.4
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 3.7e-62 241.9 176 70.5
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 3.7e-62 241.9 174 69.5
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 3.4e-60 235.3 175 72.0
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 4.5e-60 235.0 175 72.0
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 7.6e-60 234.2 174 67.2
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 9.3e-58 227.3 177 66.7
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 3.5e-57 225.3 176 67.0
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 3.5e-57 225.3 174 64.4
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 3.9e-56 221.9 178 65.7
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 5.7e-55 218.0 173 64.2
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 7.4e-55 217.6 176 63.1
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 9.6e-55 217.2 177 60.5
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 9.6e-55 217.2 176 61.4
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 4.8e-54 214.9 170 61.8
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 4.8e-54 214.9 169 65.7
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.1e-53 213.8 177 65.0
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.4e-53 213.4 177 60.5
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 4.1e-53 211.8 176 61.9
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 9.0e-53 210.7 177 60.5
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.0e-52 209.5 172 63.4
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.0e-52 209.5 172 63.4
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 2.6e-52 209.1 177 60.5
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 4.5e-52 208.4 172 63.4
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.8e-52 208.0 172 63.4
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 1.3e-51 206.8 179 62.6
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 5.0e-51 204.9 178 59.6
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.0e-51 204.9 175 60.6
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 5.0e-51 204.9 170 65.9
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 6.5e-51 204.5 176 59.7
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.5e-51 204.5 173 59.5
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 7.1e-50 201.1 174 59.8
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 1.2e-49 200.3 174 60.3
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 2.7e-49 199.1 173 58.4
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 2.7e-49 199.1 173 58.4
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 1.8e-48 196.4 180 60.6
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 1.5e-47 193.4 181 60.2
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 2.5e-47 192.6 173 55.5
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.5e-47 192.6 175 57.1
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 7.4e-47 191.0 172 60.5
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 2.2e-46 189.5 177 57.1
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.8e-46 189.1 174 55.7
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 4.8e-46 188.3 170 57.6
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 6.3e-46 188.0 179 58.1
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 8.2e-46 187.6 178 57.9
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.1e-45 187.2 179 55.9
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 4.1e-45 185.3 165 57.6
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 5.3e-45 184.9 175 54.9
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.5e-44 183.3 176 55.7
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 2.6e-44 182.6 176 56.8
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.4e-44 182.2 184 52.2
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.0e-43 180.6 178 55.1
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.3e-43 180.3 167 57.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 2.9e-43 179.1 173 54.9
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 1.9e-42 176.4 179 53.1
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 2.5e-42 176.0 174 52.9
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 9.4e-42 174.1 179 53.1
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 2.1e-41 172.9 176 51.1
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 2.7e-41 172.6 173 54.9
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 3.6e-41 172.2 179 52.5
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 4.6e-41 171.8 167 53.9
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 6.1e-41 171.4 177 52.0
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 7.9e-41 171.0 183 52.5
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 7.9e-41 171.0 175 52.0
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.0e-40 170.6 182 51.6
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 3.9e-40 168.7 177 49.7
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 5.1e-40 168.3 177 55.4
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.7e-40 167.9 170 53.5
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 6.7e-40 167.9 177 53.1
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 8.8e-40 167.5 182 53.3
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 8.8e-40 167.5 166 52.4
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.1e-39 167.2 178 51.7
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 1.5e-39 166.8 172 52.3
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.5e-39 166.8 177 52.5
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.5e-39 166.0 176 50.0
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 3.3e-39 165.6 175 50.3
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 3.3e-39 165.6 170 50.0
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 4.3e-39 165.2 180 51.7
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.2e-38 162.9 170 50.0
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.8e-37 159.8 181 48.6
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 6.9e-37 157.9 174 47.1
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 5.0e-35 151.8 175 48.0
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 6.5e-35 151.4 178 47.8
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 9.4e-34 147.5 126 61.9
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.6e-33 146.7 168 45.8
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.6e-33 146.7 168 45.8
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.1e-33 146.4 183 47.0
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 3.6e-33 145.6 188 44.1
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 5.1e-32 141.7 176 44.9
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.6e-31 139.4 144 52.8
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.3e-31 139.0 161 49.1
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 2.2e-30 136.3 170 44.7
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.2e-30 136.3 165 45.5
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 4.8e-30 135.2 161 46.6
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 8.2e-30 134.4 165 44.8
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 8.2e-30 134.4 122 56.6
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 8.2e-30 134.4 172 47.1
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.4e-29 133.7 174 46.0
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.4e-29 133.7 167 45.5
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.4e-29 132.9 174 46.0
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 3.1e-29 132.5 170 45.9
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 5.3e-29 131.7 165 44.8
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 7.0e-29 131.3 174 45.4
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 7.0e-29 131.3 174 45.4
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 9.1e-29 131.0 165 44.8
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.2e-28 130.6 174 45.4
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.2e-28 130.6 175 42.9
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.2e-28 130.6 151 47.0
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.5e-28 130.2 170 43.5
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 2.6e-28 129.4 165 45.5
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 2.6e-28 129.4 174 44.8
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 5.9e-28 128.3 168 43.5
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 2.2e-27 126.3 170 42.9
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 2.9e-27 125.9 170 42.9
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 6.5e-27 124.8 170 43.5
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 8.5e-27 124.4 167 43.7
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 8.5e-27 124.4 167 44.3
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 8.5e-27 124.4 166 45.8
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.1e-26 124.0 166 42.8
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.9e-26 123.2 168 44.0
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.5e-26 122.9 136 48.5
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 3.0e-24 115.9 103 57.3
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 4.4e-23 112.1 151 41.7
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 1.7e-22 110.2 119 45.4
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.8e-21 106.7 115 49.6
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.0e-20 103.2 90 56.7
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 6.5e-19 98.2 186 36.6
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.1e-17 93.2 162 36.4
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.8e-16 90.1 68 66.2
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.8e-16 87.8 102 49.0
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 2.0e-15 86.7 195 30.3
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 6.3e-14 81.6 174 36.2
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 2.0e-12 76.6 173 32.4


User provided reference genes

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