Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1518.8 815 100.0
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1384.4 820 89.8
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1362.1 820 88.5
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1286.2 819 83.5
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1284.6 822 82.6
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1270.0 819 82.3
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 0.0e+00 1269.6 821 82.8
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1269.2 823 81.9
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 0.0e+00 1218.4 822 79.9
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 0.0e+00 1186.0 860 75.7
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1104.7 667 89.7
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1104.4 821 71.5
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1092.0 857 69.3
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1087.0 819 71.4
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1084.7 820 70.9
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1083.2 819 70.7
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1076.6 820 69.5
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 818 70.7
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 7.2e-310 1067.0 820 68.5
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 2.7e-309 1065.1 818 69.8
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 6.1e-309 1063.9 820 70.0
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.0e-309 1063.5 818 69.7
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.3e-306 1056.2 818 69.2
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.7e-306 1054.7 820 69.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.7e-306 1054.7 820 69.5
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.8e-306 1054.3 818 69.4
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.8e-305 1052.4 820 69.5
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 2.0e-304 1048.9 819 68.9
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 7.7e-304 1047.0 785 71.3
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.0e-303 1046.6 817 68.8
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.5e-303 1043.5 825 68.4
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.5e-302 1042.7 821 68.5
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 5.2e-300 1034.2 820 68.4
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 4.8e-298 1027.7 816 67.3
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.4e-297 1025.4 821 67.4
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 2.4e-297 1025.4 817 67.3
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 9.1e-297 1023.5 816 66.9
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 3.5e-296 1021.5 816 67.5
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 8.5e-295 1016.9 821 66.3
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.5e-294 1016.1 820 67.8
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 3.2e-294 1015.0 786 69.0
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 8.8e-292 1006.9 821 66.9
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 8.8e-292 1006.9 815 65.9
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.0e-291 1005.7 820 66.7
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 5.7e-291 1004.2 821 65.9
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 2.8e-290 1001.9 820 65.6
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 2.4e-289 998.8 820 65.4
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.7e-287 992.6 821 65.7
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.7e-287 992.6 812 66.5
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 3.8e-287 991.5 820 65.1
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 2.8e-285 985.3 816 65.1
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 1.2e-283 979.9 844 63.4
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 4.4e-283 978.0 829 63.1
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 7.5e-283 977.2 756 69.0
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 2.2e-282 975.7 824 64.3
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 2.4e-281 972.2 817 64.3
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 4.1e-281 971.5 816 63.8
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.2e-280 969.9 893 61.6
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 2.0e-280 969.1 818 63.9
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 3.5e-280 968.4 850 63.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 5.9e-280 967.6 826 65.1
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.7e-279 966.1 816 64.1
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 1.5e-278 963.0 822 64.0
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.5e-278 962.2 816 64.6
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 3.6e-277 958.4 842 63.1
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 4.7e-277 958.0 817 64.3
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.8e-276 956.1 814 63.9
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 3.1e-276 955.3 814 63.1
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 7.5e-275 950.7 818 64.3
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 3.2e-273 945.3 814 62.9
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 5.4e-273 944.5 809 64.5
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 5.4e-273 944.5 814 62.5
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 3.5e-272 941.8 814 62.8
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.7e-271 939.5 814 62.7
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 3.9e-271 938.3 815 62.8
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 5.0e-271 937.9 812 63.9
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 8.6e-271 937.2 815 64.2
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.1e-270 936.8 814 62.8
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 2.1e-269 932.6 814 62.5
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 4.7e-269 931.4 751 66.0
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 2.6e-267 925.6 818 62.7
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 3.7e-266 921.8 830 61.7
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 5.4e-265 917.9 816 62.5
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 6.0e-264 914.4 755 65.4
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.3e-263 913.3 816 62.5
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.1e-261 906.0 828 60.9
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 2.8e-261 905.6 857 59.5
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.7e-261 904.8 918 56.1
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.1e-241 840.5 818 56.5
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 9.6e-238 827.4 821 55.3
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 3.1e-236 822.4 623 74.0
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 7.6e-235 817.8 814 57.7
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 4.9e-226 788.5 821 57.9
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.3e-222 775.8 682 62.8
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 4.0e-220 768.8 865 50.5
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.5e-219 766.9 820 53.5
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 7.0e-196 688.3 593 62.4
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 2.8e-168 596.7 774 46.3
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.1e-161 574.7 788 44.3
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 9.5e-161 571.6 835 43.6
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 3.1e-143 513.5 538 55.4
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 4.4e-142 509.6 861 37.6
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 9.9e-142 508.4 785 39.1
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 5.4e-140 502.7 375 68.0
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 9.2e-140 501.9 833 38.3
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.1e-135 486.9 324 75.6
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 6.0e-131 472.6 489 54.0
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 7.3e-129 465.7 404 65.1
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.0e-106 392.1 269 72.1
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.3e-101 375.2 470 48.9
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.7e-101 374.8 274 69.3
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.0e-98 364.0 275 65.1
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 7.7e-86 322.8 311 58.2
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.8e-71 275.0 242 65.7
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.3e-61 242.3 220 64.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 5.4e-55 220.3 799 26.8
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 7.7e-54 216.5 352 39.8
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.0e-41 175.3 163 55.8
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 6.4e-40 170.2 857 23.1
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 7.0e-39 166.8 207 47.8
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 2.5e-36 158.3 118 69.5
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 5.6e-36 157.1 93 81.7
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.3e-34 151.8 125 64.8
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.7e-29 135.6 221 39.4
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.1e-28 132.9 105 67.6
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.1e-28 132.9 117 66.7
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 5.2e-26 124.0 86 76.7
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 7.1e-23 113.6 70 85.7
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 2.7e-22 111.7 134 51.5
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.0e-21 109.8 71 70.4
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.0e-21 109.8 71 70.4
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 2.2e-16 92.0 68 73.5
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.1e-15 89.7 123 40.7
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 7.1e-15 87.0 79 59.5
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 3.6e-11 74.7 67 61.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 4.9e-08 64.3 47 70.2


User provided reference genes

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