Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 1.2e-236 822.8 402 100.0
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 3.1e-189 665.2 368 88.0
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 4.1e-189 664.8 376 85.1
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 1.7e-174 616.3 353 84.7
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 5.0e-163 578.2 377 77.5
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 6.5e-163 577.8 368 75.3
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 8.5e-163 577.4 371 74.1
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 4.7e-161 571.6 368 74.5
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.3e-160 569.3 377 74.0
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 3.0e-160 568.9 368 74.2
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 9.8e-159 563.9 376 74.5
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 1.4e-157 560.1 369 71.5
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.2e-156 557.0 378 71.2
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 1.9e-154 549.7 376 74.5
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 2.7e-153 545.8 376 74.7
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 3.9e-139 498.8 374 66.6
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.2e-134 483.0 368 66.0
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 5.4e-133 478.4 328 68.0
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 1.2e-132 477.2 372 65.6
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 7.3e-130 468.0 331 66.2
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.2e-129 467.2 380 63.9
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.6e-129 466.8 382 63.6
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 3.6e-129 465.7 380 63.2
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 4.7e-129 465.3 328 65.2
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 6.2e-129 464.9 308 69.8
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 8.1e-129 464.5 379 61.5
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 2.3e-128 463.0 333 63.4
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 2.3e-128 463.0 333 63.4
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 2.6e-127 459.5 386 61.9
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 4.4e-127 458.8 328 64.9
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 8.3e-126 454.5 331 65.6
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 8.3e-126 454.5 331 64.4
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 1.1e-125 454.1 329 64.1
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 1.4e-125 453.8 331 63.7
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 2.4e-125 453.0 331 64.0
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 3.2e-125 452.6 378 62.4
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.2e-124 450.7 385 57.4
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 2.1e-124 449.9 331 63.1
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 4.6e-124 448.7 329 64.4
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 3.0e-123 446.0 328 63.7
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 3.9e-123 445.7 379 60.4
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 2.5e-122 443.0 330 61.8
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 3.3e-122 442.6 368 62.0
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 2.1e-121 439.9 332 59.6
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.1e-121 439.9 347 59.1
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 2.8e-121 439.5 381 60.9
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 3.6e-121 439.1 329 62.6
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 8.1e-121 438.0 331 62.8
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 2.3e-120 436.4 332 58.4
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 4.0e-120 435.6 332 58.4
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 6.8e-120 434.9 328 60.7
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 8.9e-120 434.5 330 62.1
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 3.4e-119 432.6 326 61.3
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 3.4e-119 432.6 329 59.6
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 3.4e-119 432.6 329 59.6
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 9.9e-119 431.0 331 58.6
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 1.7e-118 430.3 387 59.7
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 3.8e-118 429.1 387 59.4
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 4.9e-118 428.7 332 58.4
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 4.1e-117 425.6 326 61.3
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 9.2e-117 424.5 329 59.0
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 1.2e-116 424.1 331 58.0
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.6e-116 423.7 328 62.2
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 3.5e-116 422.5 330 58.5
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 6.0e-116 421.8 334 59.0
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 1.0e-115 421.0 329 58.4
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 1.0e-115 421.0 329 58.1
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 1.7e-115 420.2 326 61.0
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 5.1e-115 418.7 331 61.3
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 6.6e-115 418.3 329 61.7
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 1.9e-114 416.8 330 57.0
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.5e-114 416.4 329 61.1
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 3.3e-114 416.0 328 59.1
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 5.6e-114 415.2 308 64.3
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 9.6e-114 414.5 331 61.0
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 1.2e-113 414.1 327 58.7
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.2e-113 414.1 332 60.5
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 6.2e-113 411.8 328 58.5
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 4.4e-111 405.6 300 63.0
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 5.8e-111 405.2 330 57.9
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 7.6e-111 404.8 329 59.0
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 4.9e-110 402.1 374 56.4
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 6.4e-110 401.7 328 56.7
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 6.4e-110 401.7 329 57.1
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 1.1e-109 401.0 317 56.8
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.4e-109 399.8 329 57.1
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 3.2e-109 399.4 317 56.5
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 2.1e-108 396.7 333 55.3
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 2.7e-108 396.4 334 55.4
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 6.0e-108 395.2 327 56.6
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 1.0e-107 394.4 329 55.6
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 5.1e-107 392.1 299 59.9
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 4.3e-106 389.0 329 54.7
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 2.1e-105 386.7 328 55.2
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 1.3e-102 377.5 335 55.2
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 6.4e-102 375.2 333 54.1
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 3.9e-99 365.9 332 54.5
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 4.0e-96 355.9 332 52.1
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 5.3e-96 355.5 278 58.6
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 1.5e-95 354.0 278 58.3
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 1.3e-94 350.9 329 50.8
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 1.2e-92 344.4 335 51.0
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.6e-89 334.0 396 50.5
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 3.7e-89 332.8 334 51.8
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.1e-88 331.3 360 49.7
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 7.6e-87 325.1 394 46.2
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 6.0e-84 315.5 327 48.3
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 2.1e-81 307.0 327 48.3
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 6.9e-80 302.0 345 44.1
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 4.5e-79 299.3 234 59.0
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.9e-78 296.6 327 47.4
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.6e-76 289.7 255 56.5
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 1.0e-75 288.1 340 45.6
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 5.7e-74 282.3 370 45.9
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 1.6e-73 280.8 332 47.6
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 3.7e-73 279.6 229 60.3
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.8e-72 277.3 368 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 2.6e-71 273.5 349 39.8
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 2.9e-70 270.0 322 46.3
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 2.9e-70 270.0 358 40.2
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 1.1e-69 268.1 297 48.8
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 9.7e-66 255.0 347 43.8
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 8.2e-57 225.3 400 35.2
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 1.4e-56 224.6 252 46.0
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 1.6e-55 221.1 137 72.3
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 6.1e-44 182.6 182 48.4
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 5.9e-39 166.0 126 61.1
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 7.2e-37 159.1 96 83.3
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 9.5e-37 158.7 169 49.1
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.0e-35 155.2 133 57.1
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 3.0e-35 153.7 117 64.1
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 2.6e-34 150.6 86 77.9
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 1.4e-32 144.8 107 59.8
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 1.2e-31 141.7 153 45.8
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 3.3e-29 133.7 410 27.8
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 8.0e-28 129.0 89 64.0
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 1.4e-27 128.3 153 43.1
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 2.6e-26 124.0 83 62.7
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 8.3e-25 119.0 332 29.5
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 4.1e-24 116.7 77 67.5
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 5.4e-24 116.3 350 27.7
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.5e-21 107.5 92 53.3
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 4.1e-16 90.1 90 50.0
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 3.6e-12 77.0 49 65.3
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 4.7e-12 76.6 65 58.5
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 4.0e-11 73.6 71 47.9
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.2e-09 67.8 43 62.8
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 1.1e-08 65.5 34 76.5
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 2.1e-07 61.2 40 67.5
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 3.5e-07 60.5 334 23.4
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 7.8e-07 59.3 315 23.8


User provided reference genes

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