Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.9e-111 406.0 222 100.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.6e-81 305.8 188 92.0
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.0e-80 303.9 188 91.5
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-76 290.4 188 87.2
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.2e-75 286.2 185 84.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 8.2e-75 284.3 185 85.4
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.3e-72 276.9 188 85.1
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.7e-72 276.6 188 81.4
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.8e-72 275.4 187 81.8
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.0e-72 275.0 188 83.5
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.1e-71 273.9 188 84.0
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.2e-71 272.3 187 81.8
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 5.5e-71 271.6 187 81.8
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 7.2e-71 271.2 185 79.5
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 7.2e-71 271.2 188 82.4
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 9.4e-71 270.8 187 82.4
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.2e-70 270.4 187 80.7
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.2e-70 270.4 187 81.8
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.6e-70 270.0 190 80.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.6e-70 270.0 185 80.0
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.7e-70 269.2 187 81.3
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.7e-70 269.2 187 81.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.6e-70 268.9 187 80.7
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 3.6e-70 268.9 187 79.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 4.7e-70 268.5 187 81.3
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 6.1e-70 268.1 187 80.7
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 6.1e-70 268.1 187 80.7
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 6.1e-70 268.1 187 80.7
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 8.0e-70 267.7 187 79.7
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.4e-69 266.9 187 80.2
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.4e-69 266.9 187 81.3
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.4e-69 266.9 188 82.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.8e-69 266.5 187 78.1
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.8e-69 266.5 187 80.2
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.8e-69 266.5 187 80.2
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.8e-69 266.5 187 80.2
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.3e-69 266.2 187 80.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.0e-69 265.8 187 78.6
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.0e-69 265.8 188 80.3
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 5.2e-69 265.0 186 80.6
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.2e-69 265.0 187 79.7
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 5.2e-69 265.0 186 81.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 6.8e-69 264.6 186 80.1
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 8.8e-69 264.2 187 79.7
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 8.8e-69 264.2 187 80.2
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.2e-68 263.8 187 80.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.2e-68 263.8 187 80.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.6e-68 262.7 187 78.6
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.6e-68 262.7 187 78.1
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.4e-68 262.3 187 78.6
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.4e-68 262.3 187 78.6
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 3.4e-68 262.3 187 77.5
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 4.4e-68 261.9 188 78.2
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 4.4e-68 261.9 187 79.1
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 4.4e-68 261.9 187 77.5
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 4.4e-68 261.9 188 79.3
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 5.7e-68 261.5 186 79.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 5.7e-68 261.5 187 79.1
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.7e-68 261.5 193 76.2
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.7e-68 261.5 187 79.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.7e-68 261.5 187 79.7
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 7.5e-68 261.2 187 78.6
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 7.5e-68 261.2 187 78.1
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 7.5e-68 261.2 184 80.4
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 9.8e-68 260.8 187 78.1
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-67 260.4 187 78.1
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.7e-67 260.0 187 78.1
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.2e-67 259.6 186 78.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 2.2e-67 259.6 187 77.0
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.8e-67 259.2 187 78.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 2.8e-67 259.2 187 78.1
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.8e-67 259.2 186 78.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.7e-67 258.8 187 77.5
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 6.3e-67 258.1 186 77.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 8.3e-67 257.7 195 75.9
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 8.3e-67 257.7 186 76.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.1e-66 257.3 187 77.5
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.8e-66 256.5 186 76.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 3.1e-66 255.8 188 76.1
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 3.1e-66 255.8 188 76.1
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.4e-66 255.0 220 71.8
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.4e-66 255.0 220 71.8
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 7.0e-66 254.6 185 77.8
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 7.0e-66 254.6 187 78.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 7.0e-66 254.6 203 72.9
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 9.1e-66 254.2 185 78.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.7e-65 252.7 187 75.4
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.7e-65 252.7 187 74.9
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.9e-65 251.5 232 66.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 7.7e-65 251.1 188 74.5
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.3e-64 250.4 195 73.3
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 8.5e-64 247.7 187 73.3
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.5e-63 246.9 187 74.9
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.5e-63 246.1 188 73.4
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 4.2e-63 245.4 187 77.5
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.2e-62 243.8 187 74.3
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.1e-62 243.0 185 74.1
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.7e-62 242.7 174 78.7
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 6.1e-62 241.5 228 66.2
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 8.0e-62 241.1 175 78.3
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 8.0e-62 241.1 228 63.6
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.0e-61 240.7 187 73.8
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.0e-61 240.7 195 65.1
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-61 239.6 209 66.0
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.5e-60 236.9 231 61.9
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 9.8e-60 234.2 187 67.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.7e-59 232.3 270 50.4
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 3.7e-59 232.3 188 71.3
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.1e-58 230.7 185 71.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 2.0e-57 226.5 233 54.9
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.0e-57 226.5 185 73.0
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 7.7e-57 224.6 184 67.9
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.0e-56 224.2 185 68.1
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.7e-56 223.4 187 66.8
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.7e-56 223.4 209 59.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.5e-55 220.3 187 62.6
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 2.8e-54 216.1 166 77.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-53 212.6 187 70.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 8.9e-53 211.1 192 65.6
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.2e-52 210.7 198 55.6
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.4e-52 209.1 187 70.1
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 3.2e-50 202.6 145 80.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 3.5e-49 199.1 192 63.0
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.0e-46 188.0 175 64.0
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 9.2e-42 174.5 184 53.3
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 6.0e-41 171.8 119 69.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.4e-36 155.6 181 49.2
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.9e-31 140.2 94 76.6
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.6e-31 138.7 253 42.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-28 130.6 206 44.2
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.6e-24 115.2 83 68.7
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.2e-22 108.6 68 79.4
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 6.9e-21 105.1 77 67.5
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 8.4e-19 98.2 86 65.1
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-17 94.4 72 83.3
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.0e-16 89.7 51 82.4
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.9e-16 89.4 72 76.4
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.5e-12 77.4 42 85.7
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 2.0e-12 77.0 47 74.5
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.8e-12 75.5 110 46.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 7.6e-12 75.1 45 77.8
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.3e-11 74.3 101 43.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.9e-10 70.5 98 49.0
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 3.2e-10 69.7 190 37.9
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 9.3e-10 68.2 59 69.5
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.6e-09 67.4 119 37.0
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.9e-08 62.8 112 39.3
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.9e-07 60.5 112 34.8
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.5e-07 60.1 79 49.4
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.6e-06 57.4 106 36.8
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.2e-06 55.5 185 34.6
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 8.1e-06 55.1 78 42.3


User provided reference genes

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