Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 2.6e-133 478.8 250 100.0
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 5.0e-113 411.4 250 88.4
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.4e-107 393.3 248 83.5
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 1.0e-105 387.1 248 83.5
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 6.4e-92 341.3 260 74.6
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 8.4e-92 340.9 253 72.3
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 1.6e-90 336.7 255 73.3
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 4.6e-90 335.1 260 73.5
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.1e-88 330.5 248 71.0
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.1e-88 330.5 248 71.0
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 1.6e-87 326.6 252 70.6
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 1.8e-86 323.2 249 69.5
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.4e-85 318.5 253 68.8
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 5.8e-85 318.2 255 68.6
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 7.6e-85 317.8 253 69.2
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 7.6e-85 317.8 255 67.8
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 9.9e-85 317.4 253 68.8
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.3e-84 317.0 256 67.2
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 6.4e-84 314.7 236 74.6
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.9e-83 313.2 244 68.9
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.6e-82 310.1 235 70.6
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 2.1e-82 309.7 249 67.5
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 2.1e-82 309.7 243 69.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 4.6e-82 308.5 240 72.5
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 7.8e-82 307.8 248 68.5
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 7.8e-82 307.8 248 68.5
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 2.3e-81 306.2 238 69.7
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 8.7e-81 304.3 254 67.3
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 8.7e-81 304.3 247 68.0
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 1.1e-80 303.9 254 66.9
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.3e-80 302.0 254 67.7
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 1.3e-79 300.4 248 66.5
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 1.3e-79 300.4 257 66.5
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 2.8e-79 299.3 227 70.9
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 4.8e-79 298.5 243 67.9
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 4.8e-79 298.5 261 64.8
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 4.8e-79 298.5 230 71.7
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 8.1e-79 297.7 248 67.7
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.1e-78 297.4 246 67.9
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 1.4e-78 297.0 247 66.4
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 2.4e-78 296.2 243 67.1
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 3.1e-78 295.8 256 64.5
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 4.0e-78 295.4 252 65.9
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 5.3e-78 295.0 193 76.7
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 1.5e-77 293.5 237 67.1
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 2.0e-77 293.1 252 66.7
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 2.6e-77 292.7 243 66.3
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 4.5e-77 292.0 242 66.9
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 5.8e-77 291.6 257 63.8
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 5.8e-77 291.6 202 74.3
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.3e-76 290.4 255 63.5
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.3e-76 290.4 255 63.5
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.2e-76 289.7 252 64.7
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 2.2e-76 289.7 202 73.8
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 2.9e-76 289.3 244 66.0
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 2.9e-76 289.3 255 64.7
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 2.9e-76 289.3 255 64.7
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 1.1e-75 287.3 195 77.4
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 1.1e-75 287.3 259 64.5
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.4e-75 287.0 231 68.4
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 3.2e-75 285.8 205 71.2
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 7.1e-75 284.6 237 64.6
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 7.1e-75 284.6 258 61.6
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 9.3e-75 284.3 191 74.3
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.6e-74 283.5 245 62.9
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.6e-74 283.5 254 64.2
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 6.0e-74 281.6 191 77.5
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 7.9e-74 281.2 192 75.0
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.0e-73 280.8 211 73.9
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 2.3e-73 279.6 257 60.3
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 3.0e-73 279.3 239 63.6
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 3.0e-73 279.3 224 70.1
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 3.0e-73 279.3 224 70.1
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 8.7e-73 277.7 252 63.1
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.5e-72 276.9 252 62.7
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.1e-71 273.1 196 68.4
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.1e-70 270.8 191 68.6
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 4.0e-70 268.9 218 67.9
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 1.7e-68 263.5 263 57.8
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 4.9e-68 261.9 233 60.9
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 6.4e-68 261.5 184 71.2
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 6.4e-68 261.5 170 78.2
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 3.2e-67 259.2 231 62.8
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 3.2e-67 259.2 281 56.6
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 3.2e-67 259.2 212 66.5
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 5.5e-67 258.5 233 63.5
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 9.3e-67 257.7 220 64.1
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 9.3e-67 257.7 253 58.9
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 1.6e-66 256.9 258 57.8
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.6e-66 256.9 213 62.9
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 2.1e-66 256.5 195 67.2
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.1e-66 256.5 239 59.4
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 2.1e-66 256.5 246 57.7
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 6.0e-66 255.0 195 66.7
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 7.9e-66 254.6 208 63.9
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.8e-65 253.4 256 56.6
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.3e-65 253.1 256 56.6
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 3.0e-65 252.7 221 62.9
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 3.0e-65 252.7 239 58.6
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 3.9e-65 252.3 180 70.6
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 8.7e-65 251.1 255 56.9
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.5e-64 249.6 255 58.4
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 6.2e-63 245.0 211 65.9
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 1.4e-62 243.8 153 81.7
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 9.0e-62 241.1 200 61.5
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 5.5e-59 231.9 181 63.0
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.1e-54 216.1 251 53.0
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 3.4e-53 212.6 149 74.5
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 6.5e-52 208.4 191 57.1
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 8.5e-52 208.0 200 55.0
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.1e-43 181.0 141 66.7
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.2e-28 130.2 98 66.3
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 1.1e-22 111.3 95 63.2
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 5.3e-22 109.0 102 60.8
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 9.4e-19 98.2 71 64.8
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-18 96.3 122 45.9
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-17 92.0 115 38.3
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.8e-14 84.0 71 56.3
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 5.2e-09 65.9 42 73.8
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 2.6e-08 63.5 62 58.1
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.6e-08 63.5 44 70.5


User provided reference genes

Program Settings