Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G049900 Glycine max HOM05D010195 ORTHO05D000088 1.4e-105 386.3 198 100.0
Glyma.12G048500 Glycine max HOM05D010195 ORTHO05D000088 6.6e-100 367.5 173 97.1
Glyma.11G125200 Glycine max HOM05D010195 ORTHO05D000088 3.3e-83 312.0 174 86.2
VMungo1127G0073 Vigna mungo HOM05D000395 ORTHO05D000088 1.6e-58 229.9 169 66.3
Glyma.11G124000 Glycine max HOM05D010195 ORTHO05D000088 8.2e-58 227.6 173 65.3
Phvul.011G050500 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 1.8e-57 226.5 164 67.1
Phvul.008G220000 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 1.0e-44 184.1 163 54.0
Glyma.14G055700 Glycine max HOM05D010195 ORTHO05D000088 1.3e-39 167.2 165 51.5
Lj3g0010423 Lotus japonicus HOM05D010195 ORTHO05D000088 8.5e-31 137.9 138 48.6
Lj3g0008727 Lotus japonicus HOM05D010195 ORTHO05D000088 3.2e-30 136.0 165 43.6
Medtr1g046200 Medicago truncatula HOM05D010195 ORTHO05D000088 9.4e-30 134.4 161 42.2
Lj3g0014714 Lotus japonicus HOM05D010195 ORTHO05D000088 3.6e-29 132.5 167 44.3
Medtr1g046340 Medicago truncatula HOM05D010195 ORTHO05D000088 8.8e-28 127.9 173 39.9
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.7e-26 123.6 158 37.3
Psat6g109080 Pisum sativum HOM05D010195 ORTHO05D000088 1.4e-25 120.6 162 37.7
Medtr1g046320 Medicago truncatula HOM05D010195 ORTHO05D000088 1.8e-25 120.2 160 38.1
TPR.G23993 Trifolium pratense HOM05D010195 ORTHO05D000088 1.8e-25 120.2 165 37.6
Lj2g0020994 Lotus japonicus HOM05D010195 ORTHO05D000088 5.0e-23 112.1 167 39.5
Lalb_Chr01g0003021 Lupinus albus HOM05D010195 ORTHO05D000088 6.5e-23 111.7 172 39.5
Ca_11786_v3 Cicer arietinum L. HOM05D010195 ORTHO05D000088 6.8e-20 101.7 131 37.4
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 5.0e-15 85.5 124 37.1
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 9.4e-14 81.3 124 35.5
Duzib248G0315 Durio zibethinus HOM05D008110 ORTHO05D000088 3.0e-12 76.3 133 30.1
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 1.5e-11 73.9 144 29.2
Rhsim11G0170700 Rhododendron simsii HOM05D008110 ORTHO05D000088 7.5e-11 71.6 170 28.8
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.7e-10 70.5 160 25.6
Thecc.02G027900 Theobroma cacao HOM05D008110 ORTHO05D000088 6.3e-10 68.6 134 29.1
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 1.4e-09 67.4 133 30.1
Ciclev10028843m.g Citrus clementina HOM05D000823 ORTHO05D000088 2.4e-09 66.6 126 27.8
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 2.4e-09 66.6 141 27.0
PGSC0003DMG400010668 Solanum tuberosum HOM05D008110 ORTHO05D000088 9.2e-09 64.7 141 26.2
PGSC0003DMG401025831 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.2e-08 64.3 158 27.2
Thhalv10010633m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 3.5e-08 62.8 122 31.1
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 4.5e-08 62.4 153 26.1
Hma1.2p1_1527F.1_g289060 Hydrangea macrophylla HOM05D008110 ORTHO05D000088 1.0e-07 61.2 134 27.6
Peaxi162Scf00016g01351 Petunia axillaris HOM05D008110 ORTHO05D000088 1.0e-07 61.2 132 25.8
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.0e-07 61.2 170 27.1
Carub.0008s2085 Capsella rubella HOM05D009243 ORTHO05D011355 1.3e-07 60.8 125 25.6
Carub.0008s2086 Capsella rubella HOM05D009243 ORTHO05D011355 1.3e-07 60.8 122 31.1
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.3e-07 60.8 125 27.2
TWI31G0648 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.7e-07 60.5 130 26.9
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 2.9e-07 59.7 154 26.0
AT5G60140 Arabidopsis thaliana HOM05D009243 ORTHO05D011355 3.8e-07 59.3 121 28.1
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 3.8e-07 59.3 107 28.0
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 3.8e-07 59.3 125 27.2
TPR.G23955 Trifolium pratense HOM05D010195 ORTHO05D000088 5.0e-07 58.9 77 40.3
DCAR_022075 Daucus carota HOM05D008110 ORTHO05D000088 6.6e-07 58.5 134 23.9
Sp6g21790 Schrenkiella parvula HOM05D009243 ORTHO05D011355 1.1e-06 57.8 141 27.0
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.5e-06 57.4 140 26.4
AL5G34220 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 2.5e-06 56.6 54 42.6
EL10Ac9g21796 Beta vulgaris HOM05D000823 ORTHO05D000088 2.5e-06 56.6 123 27.6
CSS0024769 Camellia sinensis var. sinensis HOM05D008110 ORTHO05D000088 2.5e-06 56.6 112 29.5
AT3G53310 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 3.3e-06 56.2 56 39.3
CAN.G322.83 Capsicum annuum HOM05D008110 ORTHO05D000088 3.3e-06 56.2 158 24.1
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 3.3e-06 56.2 147 25.9
THA.LOC104807340 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 3.3e-06 56.2 158 25.9
CARHR289330 Cardamine hirsuta HOM05D006628 ORTHO05D000088 4.3e-06 55.8 63 39.7
Aa31LG7G14390 Aethionema arabicum HOM05D006628 ORTHO05D000088 5.6e-06 55.5 126 23.8
Solyc01g109030.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 5.6e-06 55.5 136 25.7
Solyc01g108950.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 7.3e-06 55.1 154 22.7
A07p21570 Brassica napus HOM05D006628 ORTHO05D000088 9.5e-06 54.7 83 38.6
BraA07t29840Z Brassica rapa HOM05D006628 ORTHO05D000088 9.5e-06 54.7 83 38.6


User provided reference genes

Program Settings