Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G046132 Glycine max HOM05D005785 ORTHO05D007962 9.2e-78 293.5 151 100.0
Glyma.12G046200 Glycine max HOM05D005785 ORTHO05D007962 5.8e-56 221.1 132 87.1
Glyma.11G121100 Glycine max HOM05D005785 ORTHO05D007962 6.4e-55 217.6 132 84.8
Phvul.011G048000 Phaseolus vulgaris HOM05D005785 ORTHO05D007962 5.5e-54 214.5 132 83.3
Lj3g0001588 Lotus japonicus HOM05D005785 ORTHO05D007962 7.1e-54 214.2 132 82.6
Ca_20841_v3 Cicer arietinum L. HOM05D005785 ORTHO05D007962 9.6e-51 203.8 132 79.5
arahy.Tifrunner.gnm1.ann1.T05FEK Arachis hypogaea HOM05D005785 ORTHO05D007962 3.4e-48 195.3 132 76.5
VMungo1127G1831 Vigna mungo HOM05D005785 ORTHO05D007962 1.0e-47 193.7 132 76.5
Lalb_Chr03g0025851 Lupinus albus HOM05D005785 ORTHO05D007962 1.3e-47 193.4 140 76.4
TPR.G28051 Trifolium pratense HOM05D005785 ORTHO05D007962 4.9e-47 191.4 138 73.9
Medtr4g068970 Medicago truncatula HOM05D005785 ORTHO05D007962 2.7e-45 185.7 153 68.0
Psat7g185400 Pisum sativum HOM05D005785 ORTHO05D007962 7.4e-43 177.6 137 72.3
QL11p040109 Quercus lobata HOM05D005785 ORTHO05D007962 1.0e-39 167.2 135 66.7
COL.COLO4_32470 Corchorus olitorius HOM05D005785 ORTHO05D007962 5.0e-39 164.9 132 65.9
Atru.chr5.2923 Acer truncatum HOM05D005785 ORTHO05D007962 1.1e-38 163.7 132 68.2
Haze_02424 Corylus avellana HOM05D005785 ORTHO05D007962 1.4e-38 163.3 132 68.2
CiPaw.06G138100 Carya illinoinensis HOM05D005785 ORTHO05D007962 1.9e-38 162.9 132 65.9
PGR042G3650 Punica granatum HOM05D005785 ORTHO05D007962 1.9e-38 162.9 134 68.7
Cpa.g.sc62.103 Carica papaya HOM05D005785 ORTHO05D007962 2.7e-37 159.1 132 65.9
Gohir.A03G180301 Gossypium hirsutum HOM05D005785 ORTHO05D007962 3.6e-37 158.7 132 65.2
Eucgr.G00478 Eucalyptus grandis HOM05D005785 ORTHO05D007962 4.6e-37 158.3 132 64.4
Gohir.D02G203047 Gossypium hirsutum HOM05D005785 ORTHO05D007962 1.0e-36 157.1 132 64.4
Gorai.005G229200 Gossypium raimondii HOM05D005785 ORTHO05D007962 1.0e-36 157.1 132 64.4
arahy.Tifrunner.gnm1.ann1.D5Y0EF Arachis hypogaea HOM05D005785 ORTHO05D007962 2.3e-36 156.0 117 70.9
arahy.Tifrunner.gnm1.ann1.WWU0A6 Arachis hypogaea HOM05D005785 ORTHO05D007962 2.3e-36 156.0 117 70.9
Thecc.02G121200 Theobroma cacao HOM05D005785 ORTHO05D007962 2.3e-36 156.0 132 64.4
Cc02_g17970 Coffea canephora HOM05D005785 ORTHO05D007962 3.9e-36 155.2 132 63.6
TAR628G1306 Trochodendron aralioides HOM05D005785 ORTHO05D007962 8.7e-36 154.1 132 63.6
Dinv23561 Davidia involucrata HOM05D005785 ORTHO05D007962 2.5e-35 152.5 132 62.9
Nitab4.5_0001361g0190 Nicotiana tabacum HOM05D005785 ORTHO05D007962 2.5e-35 152.5 132 62.9
Potri.009G111323 Populus trichocarpa HOM05D005785 ORTHO05D007962 2.5e-35 152.5 132 62.9
Potri.T124404 Populus trichocarpa HOM05D005785 ORTHO05D007962 2.5e-35 152.5 132 62.9
Sabra09G0085100 Salix brachista HOM05D005785 ORTHO05D007962 3.3e-35 152.1 133 64.7
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 4.3e-35 151.8 132 62.9
arahy.Tifrunner.gnm1.ann1.IG85PU Arachis hypogaea HOM05D005785 ORTHO05D007962 7.4e-35 151.0 119 68.9
Ciclev10028081m.g Citrus clementina HOM05D005785 ORTHO05D007962 7.4e-35 151.0 132 62.9
Rhsim11G0172800 Rhododendron simsii HOM05D005785 ORTHO05D007962 9.7e-35 150.6 132 62.9
arahy.Tifrunner.gnm1.ann1.DDX2YA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.3e-34 150.2 119 68.9
FvH4_2g07870 Fragaria vesca HOM05D005785 ORTHO05D007962 1.3e-34 150.2 135 62.2
FAN24G2550 Fragaria x ananassa HOM05D005785 ORTHO05D007962 1.3e-34 150.2 135 62.2
FAN20G1723 Fragaria x ananassa HOM05D005785 ORTHO05D007962 1.6e-34 149.8 135 61.5
CSS0035207 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 2.2e-34 149.4 133 63.9
TWI79G0480 Tripterygium wilfordii HOM05D005785 ORTHO05D007962 2.2e-34 149.4 132 60.6
RcHm_v2.0_Chr6g0262291 Rosa chinensis HOM05D005785 ORTHO05D007962 2.8e-34 149.1 135 61.5
Potri.004G150300 Populus trichocarpa HOM05D005785 ORTHO05D007962 6.3e-34 147.9 132 62.9
FAN15G0249 Fragaria x ananassa HOM05D005785 ORTHO05D007962 8.2e-34 147.5 135 60.7
PGSC0003DMG400008269 Solanum tuberosum HOM05D005785 ORTHO05D007962 8.2e-34 147.5 133 60.2
THA.LOC104800353 Tarenaya hassleriana HOM05D005785 ORTHO05D007962 1.4e-33 146.7 134 59.0
GSVIVG01031907001 Vitis vinifera HOM05D005785 ORTHO05D007962 1.8e-33 146.4 132 64.4
Solyc10g051110.1 Solanum lycopersicum HOM05D005785 ORTHO05D007962 2.4e-33 146.0 133 60.2
Nitab4.5_0012694g0010 Nicotiana tabacum HOM05D005785 ORTHO05D007962 5.3e-33 144.8 140 58.6
MBI16_g10972_MAGBIO Magnolia biondii HOM05D005785 ORTHO05D007962 2.6e-32 142.5 132 59.1
EL10Ac9g21765 Beta vulgaris HOM05D005785 ORTHO05D007962 3.4e-32 142.1 148 53.4
CAN.G1.48 Capsicum annuum HOM05D005785 ORTHO05D007962 3.4e-32 142.1 132 59.8
CANSAT80G1909 Cannabis sativa HOM05D005785 ORTHO05D007962 5.9e-32 141.4 133 57.9
Sopen10g022810 Solanum pennellii HOM05D005785 ORTHO05D007962 5.9e-32 141.4 132 59.1
Actinidia00495 Actinidia chinensis HOM05D005785 ORTHO05D007962 1.3e-31 140.2 132 58.3
Lsat_1_v5_gn_7_89860 Lactuca sativa HOM05D005785 ORTHO05D007962 2.2e-31 139.4 135 56.3
MSTRG.5387 Avicennia marina HOM05D005785 ORTHO05D007962 2.9e-31 139.0 132 60.6
Manes.15G147600 Manihot esculenta HOM05D005785 ORTHO05D007962 2.9e-31 139.0 133 60.9
DCAR_022090 Daucus carota HOM05D005785 ORTHO05D009166 6.5e-31 137.9 132 53.8
PSO541G4825 Papaver somniferum HOM05D005785 ORTHO05D007962 6.5e-31 137.9 134 57.5
Carub.0003s1872 Capsella rubella HOM05D005785 ORTHO05D007962 8.5e-31 137.5 133 59.4
vmacro02148 Vaccinium macrocarpon HOM05D005785 ORTHO05D007962 1.1e-30 137.1 137 58.4
Thhalv10020309m.g Eutrema salsugineum HOM05D005785 ORTHO05D007962 1.4e-30 136.7 133 57.1
Duzib132G1036 Durio zibethinus HOM05D005785 ORTHO05D007962 1.9e-30 136.3 132 59.1
CSS0030803 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 3.2e-30 135.6 128 61.7
Nn5g29471 Nelumbo nucifera HOM05D005785 ORTHO05D007962 4.2e-30 135.2 132 59.8
PSO675G5886 Papaver somniferum HOM05D005785 ORTHO05D007962 4.2e-30 135.2 134 58.2
AL3G32280 Arabidopsis lyrata HOM05D005785 ORTHO05D007962 9.4e-30 134.0 133 56.4
AT3G18890 Arabidopsis thaliana HOM05D005785 ORTHO05D007962 9.4e-30 134.0 134 56.7
CARHR094330 Cardamine hirsuta HOM05D005785 ORTHO05D007962 1.2e-29 133.7 132 55.3
Ah.01g006150 Amaranthus hybridus HOM05D005785 ORTHO05D007962 2.7e-29 132.5 145 51.7
arahy.Tifrunner.gnm1.ann1.V0VBM3 Arachis hypogaea HOM05D005785 ORTHO05D007962 4.6e-29 131.7 82 79.3
Sc14g0001770 Simmondsia chinensis HOM05D005785 ORTHO05D007962 1.4e-28 130.2 163 47.9
FAN27G0274 Fragaria x ananassa HOM05D005785 ORTHO05D007962 6.7e-28 127.9 82 78.0
SalBow6G0785 Salvia bowleyana HOM05D005785 ORTHO05D007962 6.7e-28 127.9 139 54.7
Migut.B00273 Erythranthe guttata HOM05D005785 ORTHO05D007962 1.5e-27 126.7 132 57.6
Prupe.8G106300 Prunus persica HOM05D005785 ORTHO05D007962 1.5e-27 126.7 165 47.9
C05p46540 Brassica napus HOM05D005785 ORTHO05D007962 2.0e-27 126.3 156 49.4
BolC5t33383H Brassica oleracea HOM05D005785 ORTHO05D007962 2.0e-27 126.3 156 49.4
BraA05t21908Z Brassica rapa HOM05D005785 ORTHO05D007962 2.0e-27 126.3 156 49.4
Sp3g16990 Schrenkiella parvula HOM05D005785 ORTHO05D007962 2.0e-27 126.3 150 50.7
arahy.Tifrunner.gnm1.ann1.41BJXF Arachis hypogaea HOM05D005785 ORTHO05D007962 2.6e-27 125.9 91 72.5
A05p30660 Brassica napus HOM05D005785 ORTHO05D007962 4.4e-27 125.2 151 49.7
Hma1.2p1_1353F.1_g277650 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 4.4e-27 125.2 75 82.7
Hma1.2p1_2724F.1_g327500 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 4.4e-27 125.2 75 82.7
Hma1.2p1_2724F.1_g327510 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 4.4e-27 125.2 75 82.7
ECA236G5032 Erigeron canadensis HOM05D005785 ORTHO05D007962 7.4e-27 124.4 138 51.4
MD10G1083200 Malus domestica HOM05D005785 ORTHO05D007962 7.4e-27 124.4 165 48.5
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 9.7e-27 124.0 133 55.6
BcaB06g25943 Brassica carinata HOM05D005785 ORTHO05D007962 9.7e-27 124.0 150 48.7
HanXRQChr16g0505051 Helianthus annuus HOM05D005785 ORTHO05D007962 1.7e-26 123.2 132 53.0
Aa31LG8G5730 Aethionema arabicum HOM05D005785 ORTHO05D007962 2.8e-26 122.5 159 49.7
SEGI_40956 Sequoiadendron giganteum HOM05D005785 ORTHO05D007962 3.7e-26 122.1 132 51.5
AUR62011364 Chenopodium quinoa HOM05D005785 ORTHO05D007962 6.3e-26 121.3 194 42.8
ATR0733G035 Amborella trichopoda HOM05D005785 ORTHO05D007962 8.2e-26 120.9 136 56.6
Psat6g044560 Pisum sativum HOM05D005785 ORTHO05D007962 8.2e-26 120.9 101 71.3
AUR62016697 Chenopodium quinoa HOM05D005785 ORTHO05D007962 3.1e-25 119.0 194 40.2
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 5.3e-25 118.2 98 66.3
Nn5g31359 Nelumbo nucifera HOM05D005785 ORTHO05D007962 9.1e-25 117.5 83 72.3
Sed0026918 Sechium edule HOM05D005785 ORTHO05D007962 1.2e-24 117.1 136 52.9
AUR62011362 Chenopodium quinoa HOM05D000048 ORTHO05D000445 3.4e-24 115.5 75 72.0
unitig_0.g71 Utricularia gibba HOM05D005785 ORTHO05D007962 8.5e-23 110.9 132 51.5
Os10g0100300 Oryza sativa ssp. japonica HOM05D005785 ORTHO05D007962 3.2e-22 109.0 134 50.7
MELO3C018409.2 Cucumis melo HOM05D005785 ORTHO05D007962 5.5e-22 108.2 114 57.0
CsaV3_7G010200 Cucumis sativus L. HOM05D005785 ORTHO05D007962 1.2e-21 107.1 114 55.3
Actinidia12988 Actinidia chinensis HOM05D005785 ORTHO05D007962 5.2e-20 101.7 82 65.9
Zm00001eb118450 Zea mays HOM05D005785 ORTHO05D007962 5.7e-19 98.2 75 62.7
Lj6g0019018 Lotus japonicus HOM05D005785 ORTHO05D007962 1.7e-18 96.7 67 73.1
Hund06152 Selenicereus undatus HOM05D005785 ORTHO05D007962 4.8e-18 95.1 93 53.8
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 4.1e-17 92.0 83 65.1
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 7.0e-17 91.3 127 43.3
Pp3c10_3330 Physcomitrium patens HOM05D005785 ORTHO05D000513 1.3e-15 87.0 75 57.3
Hund06147 Selenicereus undatus HOM05D005785 ORTHO05D007962 1.3e-15 87.0 136 43.4
arahy.Tifrunner.gnm1.ann1.FX1CEN Arachis hypogaea HOM05D005785 ORTHO05D007962 1.7e-15 86.7 53 77.4
arahy.Tifrunner.gnm1.ann1.64QJ3Y Arachis hypogaea HOM05D005785 ORTHO05D007962 8.5e-15 84.3 53 81.1
Mapoly0002s0130 Marchantia polymorpha HOM05D005785 ORTHO05D007962 5.5e-14 81.6 138 41.3
CBR_g23490 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-13 80.1 72 52.8
Cre06.g269050 Chlamydomonas reinhardtii HOM05D005785 ORTHO05D007962 4.8e-10 68.6 71 46.5
ClCG02G005360 Citrullus lanatus HOM05D005785 ORTHO05D009166 1.1e-09 67.4 126 38.9
Eucgr.G01505 Eucalyptus grandis HOM05D005785 ORTHO05D007962 1.7e-07 60.1 32 87.5
TPR.G1685 Trifolium pratense HOM05D005785 ORTHO05D007962 5.0e-07 58.5 42 66.7


User provided reference genes

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