Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 3.9e-57 224.6 112 100.0
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 9.1e-38 160.2 89 88.8
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 8.5e-36 153.7 89 85.4
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 1.1e-35 153.3 89 85.4
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 1.4e-35 152.9 89 83.1
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 7.2e-35 150.6 89 85.4
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 1.2e-34 149.8 89 82.0
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 1.6e-34 149.4 89 83.1
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 1.0e-33 146.7 89 83.1
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 2.6e-32 142.1 88 79.5
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 2.6e-32 142.1 89 77.5
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 5.7e-32 141.0 89 77.5
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 5.7e-32 141.0 89 77.5
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 9.7e-32 140.2 89 76.4
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.3e-31 139.8 89 75.3
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 1.7e-31 139.4 89 76.4
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 2.8e-31 138.7 89 76.4
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 2.8e-31 138.7 89 71.9
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 3.7e-31 138.3 89 75.3
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 3.7e-31 138.3 89 74.2
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 3.7e-31 138.3 89 75.3
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 4.8e-31 137.9 89 75.3
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 6.3e-31 137.5 89 76.4
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 6.3e-31 137.5 89 75.3
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 8.2e-31 137.1 89 75.3
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 8.2e-31 137.1 89 73.0
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 1.8e-30 136.0 89 73.0
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 3.1e-30 135.2 89 73.0
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 3.1e-30 135.2 89 73.0
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 3.1e-30 135.2 89 73.0
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 4.1e-30 134.8 89 73.0
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 4.1e-30 134.8 89 75.3
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 5.3e-30 134.4 89 73.0
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 6.9e-30 134.0 89 75.3
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 9.1e-30 133.7 89 73.0
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 1.2e-29 133.3 89 70.8
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 1.2e-29 133.3 91 73.6
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 1.5e-29 132.9 89 70.8
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.5e-29 132.9 89 74.2
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 1.5e-29 132.9 88 73.9
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 1.5e-29 132.9 88 71.6
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 1.5e-29 132.9 89 73.0
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 2.0e-29 132.5 88 70.5
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 2.0e-29 132.5 89 73.0
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 2.0e-29 132.5 91 73.6
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 2.6e-29 132.1 89 74.2
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 2.6e-29 132.1 89 74.2
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 3.4e-29 131.7 89 71.9
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 3.4e-29 131.7 91 72.5
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 4.5e-29 131.3 91 72.5
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 4.5e-29 131.3 89 71.9
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 4.5e-29 131.3 89 73.0
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 5.9e-29 131.0 88 71.6
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 5.9e-29 131.0 89 71.9
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 5.9e-29 131.0 89 73.0
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 7.7e-29 130.6 88 70.5
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 1.0e-28 130.2 93 69.9
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 1.0e-28 130.2 89 73.0
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 1.3e-28 129.8 89 70.8
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 1.7e-28 129.4 89 69.7
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 1.7e-28 129.4 88 69.3
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 1.7e-28 129.4 88 69.3
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 1.7e-28 129.4 88 69.3
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 1.7e-28 129.4 89 73.0
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 1.7e-28 129.4 89 70.8
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 1.7e-28 129.4 88 70.5
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 1.7e-28 129.4 91 71.4
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 1.7e-28 129.4 89 70.8
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 1.7e-28 129.4 89 68.5
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 1.7e-28 129.4 88 70.5
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 2.2e-28 129.0 88 69.3
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 2.9e-28 128.6 101 63.4
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 2.9e-28 128.6 89 70.8
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 2.9e-28 128.6 89 69.7
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 3.8e-28 128.3 89 73.0
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 3.8e-28 128.3 89 69.7
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 5.0e-28 127.9 89 68.5
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 5.0e-28 127.9 91 70.3
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 1.4e-27 126.3 89 69.7
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 2.5e-27 125.6 89 66.3
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 5.5e-27 124.4 90 71.1
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 9.4e-27 123.6 88 67.0
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 1.6e-26 122.9 88 68.2
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 3.6e-26 121.7 88 67.0
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 4.7e-26 121.3 103 64.1
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 4.7e-26 121.3 111 58.6
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 6.1e-26 120.9 72 83.3
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 1.1e-24 116.7 91 61.5
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 7.4e-24 114.0 88 62.5
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 6.3e-23 110.9 89 65.2
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 8.0e-18 94.0 88 50.0
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 3.2e-11 72.0 48 75.0
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 4.2e-11 71.6 49 69.4
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 7.2e-11 70.9 47 72.3
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 1.2e-10 70.1 43 79.1
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 3.6e-10 68.6 88 44.3
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 3.6e-10 68.6 48 70.8
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 4.0e-09 65.1 47 66.0
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 8.8e-09 63.9 47 63.8
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 5.4e-06 54.7 89 34.8


User provided reference genes

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