Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 2.2e-196 688.7 341 100.0
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 3.0e-177 625.2 353 88.7
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 1.1e-176 623.2 352 88.4
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 8.8e-169 597.0 351 86.0
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.2e-168 596.7 352 84.9
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 2.0e-168 595.9 353 85.0
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 2.6e-168 595.5 360 85.0
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 8.3e-167 590.5 361 83.1
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 1.8e-166 589.3 352 84.4
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 1.0e-164 583.6 360 83.1
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 8.5e-164 580.5 361 82.8
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 1.5e-163 579.7 333 87.4
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 7.0e-158 560.8 355 80.3
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 5.9e-157 557.8 405 72.1
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 1.9e-155 552.7 359 78.6
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 7.5e-152 540.8 349 76.2
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 9.8e-152 540.4 351 75.8
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 2.4e-150 535.8 349 75.9
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.4e-150 535.8 349 75.6
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 4.1e-150 535.0 349 75.9
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 4.1e-150 535.0 351 74.4
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 4.6e-149 531.6 352 75.6
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 2.3e-148 529.3 352 73.9
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 3.0e-148 528.9 351 73.5
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 5.0e-148 528.1 351 74.6
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 5.6e-147 524.6 353 73.7
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 7.3e-147 524.2 349 72.5
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 1.2e-146 523.5 353 73.7
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.6e-146 523.1 352 72.7
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.6e-146 523.1 349 71.9
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.6e-146 521.9 347 73.5
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 4.7e-146 521.5 351 73.2
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 6.2e-146 521.2 351 72.1
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 1.8e-145 519.6 352 73.3
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 6.8e-145 517.7 347 73.2
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 4.4e-144 515.0 351 71.8
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 8.3e-143 510.8 350 71.4
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 5.4e-142 508.1 327 74.9
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 5.4e-142 508.1 352 71.0
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 2.7e-141 505.8 352 70.7
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 6.0e-141 504.6 351 71.5
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 1.0e-140 503.8 353 71.1
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 8.6e-140 500.7 352 69.6
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 2.5e-139 499.2 352 69.6
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 2.1e-138 496.1 352 69.0
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 3.6e-138 495.4 326 73.3
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 1.1e-137 493.8 272 90.1
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 2.3e-137 492.7 353 70.3
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 2.0e-136 489.6 348 70.1
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 5.8e-136 488.0 354 68.1
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 9.8e-136 487.3 321 73.8
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 2.9e-135 485.7 323 71.2
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 2.9e-135 485.7 354 69.5
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 3.7e-135 485.3 352 67.0
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 1.9e-134 483.0 356 68.0
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 3.2e-134 482.3 301 75.7
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 9.2e-134 480.7 354 68.9
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 2.7e-133 479.2 289 78.5
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 4.6e-133 478.4 319 71.8
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 4.6e-133 478.4 351 67.0
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 4.6e-133 478.4 312 72.4
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 6.0e-133 478.0 354 68.6
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 1.0e-132 477.2 301 75.1
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 1.0e-132 477.2 349 67.9
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.7e-132 476.5 345 67.8
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 8.6e-132 474.2 354 65.8
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 2.5e-131 472.6 352 65.6
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.5e-131 472.6 363 67.5
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.6e-131 471.5 362 67.4
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.6e-130 469.9 356 66.0
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 6.2e-130 468.0 354 66.7
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 4.0e-129 465.3 352 68.2
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 5.2e-129 464.9 354 66.4
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.2e-128 463.8 361 63.4
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 1.5e-128 463.4 311 70.1
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 9.9e-128 460.7 355 64.5
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 2.9e-127 459.1 373 65.1
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.9e-127 459.1 352 67.6
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 3.7e-127 458.8 315 70.2
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 3.2e-126 455.7 355 62.8
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 4.1e-126 455.3 355 62.8
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 5.4e-126 454.9 329 70.2
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.2e-125 453.8 307 72.6
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 1.0e-124 450.7 301 78.7
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.3e-124 450.3 311 68.8
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 5.1e-124 448.4 355 62.8
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 6.6e-124 448.0 311 69.8
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 8.6e-124 447.6 355 62.8
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 3.3e-123 445.7 311 69.5
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 3.3e-123 445.7 308 69.2
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 4.3e-123 445.3 298 70.8
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 4.3e-123 445.3 308 68.5
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 5.6e-123 444.9 311 69.1
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 5.6e-123 444.9 311 69.1
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 1.2e-122 443.7 311 69.1
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.6e-122 443.4 289 72.3
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 2.1e-122 443.0 355 62.8
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 3.6e-122 442.2 308 68.5
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 1.4e-121 440.3 308 68.2
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 2.4e-121 439.5 351 63.2
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 2.6e-120 436.0 380 60.0
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 4.4e-120 435.3 355 61.4
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 5.4e-118 428.3 355 59.7
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 3.5e-117 425.6 304 67.1
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 6.6e-116 421.4 302 65.6
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 6.6e-116 421.4 359 58.2
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.9e-115 419.9 295 70.2
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 4.0e-113 412.1 360 58.3
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 8.4e-111 404.4 307 68.1
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 9.3e-110 401.0 331 60.4
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.2e-109 400.6 310 68.1
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 1.6e-109 400.2 308 63.6
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 2.8e-106 389.4 364 56.9
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 5.3e-105 385.2 306 66.3
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 1.3e-103 380.6 230 77.8
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 1.9e-99 366.7 304 59.2
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.2e-96 357.5 290 62.1
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 3.4e-96 355.9 296 56.4
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.9e-94 350.1 345 53.0
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.2e-93 347.4 295 54.9
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 2.1e-93 346.7 266 66.2
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 1.6e-90 337.0 318 54.1
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-89 334.0 307 56.0
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 2.9e-87 326.2 213 71.4
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.3e-84 317.4 289 57.1
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 3.9e-76 289.3 285 48.1
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 6.5e-71 271.9 156 86.5
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 4.7e-69 265.8 144 90.3
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 3.9e-68 262.7 295 46.4
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 4.1e-57 226.1 270 46.7
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 6.8e-52 208.8 145 73.1
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.2e-51 208.0 155 65.2
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 9.1e-49 198.4 140 72.9
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 7.7e-48 195.3 140 67.1
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 2.9e-47 193.4 286 46.9
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 7.2e-46 188.7 123 77.2
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 1.5e-43 181.0 245 40.4
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 2.0e-43 180.6 292 38.0
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 2.7e-40 170.2 319 35.1
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 4.4e-35 152.9 153 52.3
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 3.3e-30 136.7 98 66.3
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 5.8e-27 125.9 80 73.8
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 8.3e-26 122.1 256 34.8
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.7e-21 106.3 94 57.4
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 7.5e-19 99.0 161 39.8
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 5.4e-17 92.8 63 65.1
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 9.5e-14 82.0 76 51.3
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 6.2e-13 79.3 47 74.5
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.5e-11 74.7 52 65.4
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 2.0e-11 74.3 54 61.1
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.9e-10 70.5 53 67.9
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.1e-09 68.6 72 52.8
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 2.4e-09 67.4 148 31.1
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 5.4e-09 66.2 238 23.1
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.6e-08 64.7 148 29.7
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 1.6e-08 64.7 251 24.7
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 7.8e-08 62.4 223 22.9
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 7.8e-08 62.4 224 24.1
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 1.3e-07 61.6 34 70.6
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 2.5e-06 57.4 152 29.6
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 2.5e-06 57.4 222 21.2
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.3e-06 57.0 164 23.8
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 4.3e-06 56.6 147 27.2
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 5.6e-06 56.2 223 21.5
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 7.3e-06 55.8 223 21.5
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 7.3e-06 55.8 223 21.5
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 7.3e-06 55.8 223 21.5
Cfa022524 Carpinus fangiana HOM05D002999 ORTHO05D003137 7.3e-06 55.8 164 29.3
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 7.3e-06 55.8 222 21.2


User provided reference genes

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