Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 5.9e-175 617.5 318 100.0
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 4.7e-156 554.7 319 89.7
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.3e-145 520.0 319 84.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.5e-141 505.8 319 82.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.7e-137 493.0 320 81.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.7e-134 483.0 317 79.2
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.1e-133 480.3 320 79.7
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 6.8e-131 471.1 319 77.7
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 4.0e-123 445.3 317 74.4
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.7e-121 439.9 311 71.4
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 5.2e-115 418.3 318 71.4
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.6e-114 416.0 311 71.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.9e-113 412.5 311 67.2
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.9e-113 412.5 288 76.4
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 9.3e-104 380.9 295 64.1
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.9e-101 373.2 299 65.6
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.1e-99 367.5 295 63.7
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.0e-99 365.5 315 60.3
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 4.5e-98 362.1 318 57.2
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 4.5e-98 362.1 301 62.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.8e-98 361.7 327 59.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.9e-98 360.9 295 62.7
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.7e-97 360.1 318 56.9
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.4e-97 357.8 318 59.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.4e-96 356.3 317 59.3
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 4.2e-96 355.5 318 56.9
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 9.3e-96 354.4 320 58.1
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.2e-95 354.0 309 57.9
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.6e-95 353.6 302 60.3
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.6e-95 353.6 321 57.6
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 2.5e-93 346.3 343 60.1
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.3e-93 345.9 298 57.7
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 5.6e-93 345.1 317 55.2
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.1e-92 341.3 317 56.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.2e-90 337.4 318 56.6
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.2e-89 333.2 318 57.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-89 332.4 318 56.0
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 4.9e-89 332.0 313 56.5
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-88 330.1 327 55.4
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.6e-87 327.0 315 56.5
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.6e-87 327.0 323 56.3
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 4.6e-87 325.5 320 54.1
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 4.6e-87 325.5 341 54.3
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.3e-86 323.9 312 55.1
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 3.0e-86 322.8 294 57.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 5.1e-86 322.0 309 54.7
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 5.1e-86 322.0 297 56.9
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 5.1e-86 322.0 313 58.1
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.1e-85 320.9 279 58.4
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.3e-85 319.3 308 56.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 4.3e-85 318.9 316 55.7
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.6e-85 318.5 296 55.1
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 7.4e-85 318.2 300 54.7
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 7.4e-85 318.2 309 54.4
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 9.6e-85 317.8 271 60.5
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.6e-85 317.8 300 53.7
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.3e-84 317.4 318 52.2
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.3e-84 317.4 301 54.5
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.8e-84 316.2 301 55.8
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.8e-84 316.2 312 53.8
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 4.8e-84 315.5 320 52.8
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.1e-83 312.8 310 53.9
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 4.0e-83 312.4 294 57.1
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 4.0e-83 312.4 315 53.7
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.0e-83 312.4 315 52.7
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.0e-83 311.2 300 52.3
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.2e-82 310.8 300 53.3
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.0e-82 310.1 284 56.0
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.6e-82 309.7 300 53.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-82 309.7 300 53.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.6e-82 309.7 300 53.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.4e-82 309.3 300 52.3
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.5e-82 308.9 300 53.0
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.5e-82 308.9 300 52.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 5.8e-82 308.5 301 53.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 5.8e-82 308.5 301 53.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 5.8e-82 308.5 294 56.8
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.8e-82 308.5 315 52.7
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.0e-81 307.8 300 53.0
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.0e-81 307.8 296 54.4
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.3e-81 307.4 300 52.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.3e-81 307.4 313 52.1
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-81 307.4 319 53.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 2.2e-81 306.6 300 52.7
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 2.2e-81 306.6 300 52.7
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.2e-81 306.6 301 53.8
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.8e-81 305.8 296 55.4
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 3.8e-81 305.8 318 52.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 6.5e-81 305.1 301 53.2
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 6.5e-81 305.1 301 53.2
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 6.5e-81 305.1 296 55.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.4e-80 303.9 301 53.2
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-80 303.5 301 53.5
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 3.2e-80 302.8 320 54.4
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 3.2e-80 302.8 266 58.3
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 4.2e-80 302.4 319 51.7
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 4.2e-80 302.4 321 52.3
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 5.5e-80 302.0 321 52.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 7.1e-80 301.6 315 51.1
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.1e-79 300.1 302 51.7
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 3.5e-79 299.3 319 51.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 6.0e-79 298.5 314 48.4
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.5e-77 293.9 320 50.9
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.9e-77 293.5 304 50.0
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 2.5e-77 293.1 300 51.0
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 3.3e-77 292.7 320 49.4
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 3.3e-77 292.7 320 49.4
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 3.3e-77 292.7 320 49.4
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.3e-77 292.7 317 49.2
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 4.3e-77 292.4 301 50.5
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.7e-77 292.0 268 57.5
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 7.4e-77 291.6 316 49.1
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 7.4e-77 291.6 319 51.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.2e-76 290.0 311 51.4
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.8e-76 289.7 311 51.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.8e-76 288.9 319 48.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 6.3e-76 288.5 300 51.7
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.3e-76 288.5 298 52.3
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.8e-75 287.0 368 47.6
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 2.4e-75 286.6 319 48.0
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.6e-74 283.1 309 50.2
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 5.0e-73 278.9 320 50.3
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 6.5e-73 278.5 258 55.0
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.1e-72 277.7 259 56.0
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.4e-72 277.3 318 49.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.1e-71 273.5 302 48.0
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.7e-71 273.1 259 55.2
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.6e-71 272.7 259 56.8
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.9e-67 258.5 394 40.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.7e-66 255.0 301 48.5
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 2.2e-65 253.4 303 48.8
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 6.5e-65 251.9 300 47.7
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.2e-63 247.7 326 45.7
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.2e-63 247.7 300 46.7
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.0e-62 243.0 317 43.8
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 5.7e-53 212.2 219 49.3
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.5e-48 197.6 214 50.9
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.4e-46 191.0 246 41.9
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.6e-39 167.5 164 52.4
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 4.4e-37 159.5 170 51.2
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 8.3e-36 155.2 309 33.3
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.1e-32 144.8 311 33.4
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.4e-30 137.9 193 43.0
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-30 137.9 142 50.7
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.7e-28 131.0 296 30.4
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.2e-26 124.8 291 33.3
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.3e-24 116.7 135 42.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.5e-24 115.2 135 41.5
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 1.4e-22 111.3 86 67.4
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.8e-21 105.1 115 50.4
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.9e-20 103.6 101 51.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.0e-17 92.8 91 56.0
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.0e-17 92.8 91 56.0
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.6e-16 89.4 87 54.0
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.3e-16 89.0 100 52.0
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.2e-13 81.6 74 51.4
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.2e-13 81.6 75 50.7
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 1.2e-13 81.6 74 51.4
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 2.2e-12 77.4 76 48.7
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 7.0e-11 72.4 118 42.4
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 7.0e-11 72.4 40 87.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.1e-07 60.8 79 36.7


User provided reference genes

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