Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 7.7e-51 203.4 93 100.0
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 4.9e-45 184.1 94 89.4
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.0e-39 166.4 88 84.1
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.4e-39 166.0 88 85.2
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.3e-39 165.2 88 83.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.5e-38 162.5 87 81.6
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.4e-38 161.4 90 78.9
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 5.8e-38 160.6 93 76.3
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 9.8e-38 159.8 93 76.3
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.7e-37 159.1 93 80.6
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.7e-37 159.1 78 89.7
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.7e-37 159.1 81 86.4
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.7e-37 159.1 81 86.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 3.7e-37 157.9 82 84.1
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 4.9e-37 157.5 98 75.5
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 4.9e-37 157.5 81 85.2
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 6.4e-37 157.1 81 81.5
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 6.4e-37 157.1 81 81.5
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 8.3e-37 156.8 78 87.2
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 1.1e-36 156.4 78 84.6
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.4e-36 156.0 89 79.8
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.4e-36 156.0 88 78.4
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.4e-36 156.0 81 84.0
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.9e-36 155.6 78 84.6
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 2.4e-36 155.2 93 77.4
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.2e-36 154.8 93 78.5
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 3.2e-36 154.8 88 77.3
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.1e-36 154.5 93 76.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.4e-36 154.1 92 72.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 5.4e-36 154.1 93 74.2
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.4e-36 154.1 81 84.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.2e-35 152.9 95 75.8
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.2e-35 152.9 78 85.9
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.2e-35 152.9 90 77.8
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.6e-35 152.5 92 76.1
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.0e-35 152.1 75 84.0
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.0e-35 152.1 91 78.0
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.7e-35 151.8 86 77.9
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 4.6e-35 151.0 93 76.3
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 6.0e-35 150.6 76 84.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 6.0e-35 150.6 75 82.7
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 6.0e-35 150.6 90 76.7
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 6.0e-35 150.6 76 85.5
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 7.8e-35 150.2 86 76.7
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 3.0e-34 148.3 93 74.2
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 5.0e-34 147.5 90 73.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 5.0e-34 147.5 90 74.4
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 8.6e-34 146.7 76 84.2
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 8.6e-34 146.7 89 74.2
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.9e-33 145.6 90 73.3
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 2.5e-33 145.2 76 82.9
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 3.3e-33 144.8 88 71.6
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.3e-33 144.8 80 76.2
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 3.3e-33 144.8 78 76.9
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 3.3e-33 144.8 88 73.9
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 5.6e-33 144.1 85 74.1
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 5.6e-33 144.1 88 72.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 7.3e-33 143.7 86 74.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 7.3e-33 143.7 95 70.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 9.5e-33 143.3 91 70.3
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 9.5e-33 143.3 92 72.8
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.1e-32 142.1 89 73.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 2.8e-32 141.7 91 69.2
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.8e-32 141.7 78 78.2
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 4.7e-32 141.0 91 69.2
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.4e-31 139.4 76 77.6
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.4e-31 139.4 80 77.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.4e-31 139.4 87 72.4
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.8e-31 139.0 86 69.8
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.8e-31 139.0 86 70.9
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 2.3e-31 138.7 76 76.3
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 8.9e-31 136.7 91 68.1
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.2e-30 136.3 86 68.6
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 9.8e-30 133.3 86 67.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.9e-29 131.7 76 71.1
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 3.7e-29 131.3 136 51.5
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.1e-28 129.8 97 62.9
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 2.7e-27 125.2 97 60.8
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.9e-25 119.0 143 46.9
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 7.6e-22 107.1 76 63.2
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 9.9e-22 106.7 88 60.2
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 3.5e-19 98.2 42 100.0
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.9e-17 92.4 43 88.4
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 7.3e-17 90.5 200 32.0
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.4e-15 86.3 41 87.8
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.1e-15 85.1 41 82.9
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.2e-14 83.2 42 78.6
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 6.4e-13 77.4 49 75.5
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 7.1e-12 73.9 49 69.4
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 3.5e-11 71.6 52 71.2
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.5e-11 71.6 40 72.5
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 4.6e-11 71.2 52 61.5
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 2.3e-10 68.9 81 43.2
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 3.0e-10 68.6 32 90.6
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 3.9e-10 68.2 81 40.7
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 8.7e-10 67.0 81 38.3
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 8.7e-10 67.0 79 40.5
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.1e-09 66.6 79 39.2
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.1e-09 66.6 79 41.8
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.1e-09 66.6 79 41.8
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 1.1e-09 66.6 79 41.8
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.9e-09 65.9 79 39.2
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.9e-09 65.9 81 39.5
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.9e-09 65.9 79 39.2
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.5e-09 65.5 79 40.5
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.5e-09 65.5 79 40.5
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.5e-09 65.5 79 39.2
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 2.5e-09 65.5 81 39.5
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.3e-09 65.1 79 39.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 4.3e-09 64.7 79 38.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 4.3e-09 64.7 79 38.0
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.3e-09 64.7 79 40.5
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 5.6e-09 64.3 79 39.2
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 7.3e-09 63.9 81 37.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 7.3e-09 63.9 79 38.0
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 7.3e-09 63.9 81 39.5
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 7.3e-09 63.9 81 38.3
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 7.3e-09 63.9 81 39.5
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 38.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 9.6e-09 63.5 81 39.5
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 9.6e-09 63.5 81 39.5
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 9.6e-09 63.5 79 38.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 38.0
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.6e-08 62.8 83 37.3
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.6e-08 62.8 86 37.2
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.6e-08 62.8 87 37.9
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.6e-08 62.8 86 38.4
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.6e-08 62.8 94 38.3
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 38.0
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.6e-08 62.8 92 37.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.1e-08 62.4 86 37.2
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.1e-08 62.4 79 38.0
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 2.1e-08 62.4 79 36.7
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.1e-08 62.4 82 39.0
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.1e-08 62.4 79 38.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.1e-08 62.4 79 38.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 2.1e-08 62.4 77 39.0
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 39.2
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 39.2
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 39.2
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 39.2
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 2.8e-08 62.0 81 38.3
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 2.8e-08 62.0 83 38.6
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 2.8e-08 62.0 83 37.3
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 39.2
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 38.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 3.6e-08 61.6 79 39.2
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.6e-08 61.6 83 38.6
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 6.2e-08 60.8 92 34.8
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 6.2e-08 60.8 87 39.1
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 8.1e-08 60.5 87 35.6
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.1e-07 60.1 87 37.9
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.1e-07 60.1 87 37.9
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.4e-07 59.7 95 34.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 36.7
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.8e-07 59.3 83 36.1
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 36.7
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.4e-07 58.9 79 36.7
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 2.4e-07 58.9 83 36.1
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.4e-07 58.9 83 37.3
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 3.1e-07 58.5 79 32.9
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 4.0e-07 58.2 47 63.8
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 6.9e-07 57.4 79 32.9
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 6.9e-07 57.4 83 36.1
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 6.9e-07 57.4 87 34.5
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.5e-06 56.2 79 34.2
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 2.0e-06 55.8 102 31.4
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 2.0e-06 55.8 77 36.4
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 2.6e-06 55.5 101 31.7
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 2.6e-06 55.5 93 34.4
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 4.4e-06 54.7 79 35.4
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 9.9e-06 53.5 91 33.0


User provided reference genes

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