Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G016051 Glycine max HOM05D006411 ORTHO05D007563 2.9e-51 204.9 100 100.0
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 6.8e-37 157.1 102 80.4
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 1.3e-35 152.9 102 76.5
Lalb_Chr19g0140051 Lupinus albus HOM05D006411 ORTHO05D007563 1.6e-30 136.0 102 67.6
Ca_18949_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 2.6e-28 128.6 88 72.7
Ca_29765_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 2.6e-28 128.6 88 72.7
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 9.9e-28 126.7 87 71.3
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 1.7e-27 125.9 87 71.3
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 2.4e-26 122.1 86 66.3
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 5.1e-16 87.8 83 54.2
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 2.5e-15 85.5 81 54.3
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 1.3e-14 83.2 93 48.4
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 4.8e-14 81.3 81 51.9
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 6.2e-14 80.9 85 48.2
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 8.1e-14 80.5 97 46.4
CiPaw.05G102200 Carya illinoinensis HOM05D006411 ORTHO05D007563 8.1e-14 80.5 101 46.5
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 1.4e-13 79.7 80 53.8
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 2.4e-13 79.0 80 48.8
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 2.4e-13 79.0 85 47.1
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 2.4e-13 79.0 97 46.4
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 3.1e-13 78.6 80 52.5
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 3.1e-13 78.6 79 53.2
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 5.3e-13 77.8 76 55.3
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 5.3e-13 77.8 76 55.3
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 5.3e-13 77.8 76 55.3
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 9.0e-13 77.0 97 45.4
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 1.2e-12 76.6 76 52.6
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 2.0e-12 75.9 81 46.9
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 4.5e-12 74.7 85 47.1
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 5.8e-12 74.3 86 46.5
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 1.7e-11 72.8 80 46.2
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 1.7e-11 72.8 76 50.0
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 2.2e-11 72.4 83 48.2
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 2.2e-11 72.4 91 45.1
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 2.2e-11 72.4 98 45.9
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 2.9e-11 72.0 81 46.9
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 3.8e-11 71.6 82 47.6
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 3.8e-11 71.6 81 46.9
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 4.9e-11 71.2 75 54.7
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 4.9e-11 71.2 75 53.3
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 4.9e-11 71.2 82 43.9
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 4.9e-11 71.2 81 43.2
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 6.5e-11 70.9 77 50.6
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 8.4e-11 70.5 84 45.2
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 8.4e-11 70.5 84 42.9
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 1.1e-10 70.1 86 46.5
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 1.1e-10 70.1 82 51.2
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 1.4e-10 69.7 79 48.1
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 3.2e-10 68.6 75 48.0
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 4.2e-10 68.2 79 48.1
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 4.2e-10 68.2 77 46.8
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 4.2e-10 68.2 77 53.2
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 5.5e-10 67.8 82 48.8
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 9.3e-10 67.0 77 45.5
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 9.3e-10 67.0 75 52.0
Nn2g15361 Nelumbo nucifera HOM05D006411 ORTHO05D007563 9.3e-10 67.0 78 48.7
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 1.2e-09 66.6 82 47.6
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 1.6e-09 66.2 82 46.3
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 1.6e-09 66.2 89 46.1
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 2.1e-09 65.9 77 45.5
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 2.7e-09 65.5 76 47.4
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 2.7e-09 65.5 80 47.5
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 2.7e-09 65.5 81 45.7
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 3.5e-09 65.1 97 41.2
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 3.5e-09 65.1 76 47.4
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 3.5e-09 65.1 84 46.4
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 3.5e-09 65.1 76 51.3
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 7.9e-09 63.9 82 46.3
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 7.9e-09 63.9 76 44.7
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 1.0e-08 63.5 80 47.5
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 1.0e-08 63.5 82 46.3
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 1.0e-08 63.5 82 45.1
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.0e-08 63.5 82 46.3
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 1.0e-08 63.5 80 47.5
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 1.0e-08 63.5 76 44.7
CARHR099210 Cardamine hirsuta HOM05D006411 ORTHO05D007563 1.8e-08 62.8 96 40.6
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 2.3e-08 62.4 72 48.6
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 3.0e-08 62.0 96 40.6
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 3.0e-08 62.0 83 43.4
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 5.1e-08 61.2 97 39.2
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 5.1e-08 61.2 79 46.8
A07p09200 Brassica napus HOM05D006411 ORTHO05D007563 8.7e-08 60.5 95 42.1
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 1.9e-07 59.3 96 38.5
BraA07t28715Z Brassica rapa HOM05D006411 ORTHO05D007563 1.9e-07 59.3 95 41.1
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 1.9e-07 59.3 97 38.1
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 3.3e-07 58.5 96 38.5
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 4.3e-07 58.2 96 36.5
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.1e-06 55.8 77 45.5
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 4.8e-06 54.7 97 38.1
SGA_v2.0_scaffold360G49865 Striga asiatica HOM05D020805 ORTHO05D007563 8.2e-06 53.9 83 42.2


User provided reference genes

Program Settings