Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 9.1e-257 889.8 469 100.0
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 9.4e-254 879.8 469 98.5
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 9.1e-249 863.2 469 96.4
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 3.9e-244 847.8 469 94.7
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.1e-243 846.3 468 94.2
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.4e-241 839.3 468 94.0
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 1.2e-235 819.7 468 91.0
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 7.5e-235 817.0 469 91.5
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 7.5e-235 817.0 469 91.0
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.8e-234 814.3 469 90.8
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 8.2e-234 813.5 470 90.2
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.1e-233 813.1 469 90.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 4.1e-233 811.2 469 90.4
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 5.3e-233 810.8 469 90.2
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 9.1e-233 810.1 469 90.0
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.2e-232 809.7 469 90.4
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 4.5e-232 807.7 469 90.2
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 2.2e-231 805.4 469 89.8
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 2.9e-231 805.1 468 89.5
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 5.0e-231 804.3 469 88.1
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 8.5e-231 803.5 469 89.3
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.1e-230 803.1 469 90.2
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.9e-230 802.4 469 90.2
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 3.2e-230 801.6 469 89.1
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 7.2e-230 800.4 471 89.2
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 9.4e-230 800.0 469 89.6
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 9.4e-230 800.0 469 89.1
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.1e-229 798.9 469 88.7
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.6e-229 798.1 469 88.7
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 4.7e-229 797.7 469 87.6
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 4.7e-229 797.7 469 89.1
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 8.0e-229 797.0 469 88.1
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 4.0e-228 794.7 470 88.3
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.0e-228 794.7 469 89.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 5.2e-228 794.3 469 88.9
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 6.8e-228 793.9 469 90.0
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.2e-227 793.1 506 84.0
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.0e-227 792.3 469 88.3
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 7.5e-227 790.4 493 85.2
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 9.8e-227 790.0 469 87.6
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.3e-226 789.6 468 90.0
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 3.7e-226 788.1 506 83.6
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.3e-226 786.9 469 87.2
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.3e-226 786.9 469 87.2
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.8e-225 785.8 469 87.0
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 4.1e-225 784.6 469 87.2
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 4.1e-225 784.6 469 87.6
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.2e-224 783.1 470 86.4
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.7e-224 781.9 470 86.2
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 3.5e-224 781.6 470 87.0
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.7e-223 779.2 469 85.9
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 5.0e-223 777.7 470 86.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.9e-222 775.8 470 86.0
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 9.5e-222 773.5 469 85.3
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 6.1e-221 770.8 464 86.9
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.2e-220 767.7 469 84.4
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.9e-220 766.9 469 84.2
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 2.2e-218 762.3 469 83.6
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 2.2e-218 762.3 449 90.0
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.7e-218 761.5 545 76.9
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 3.7e-218 761.5 469 84.4
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 6.3e-218 760.8 469 83.8
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 1.1e-217 760.0 469 83.4
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 83.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.1e-217 758.4 469 83.8
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 5.4e-217 757.7 469 83.2
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.6e-216 756.1 469 83.2
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 2.7e-216 755.4 469 82.9
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 2.7e-216 755.4 469 82.9
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.0e-215 753.4 469 82.9
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.7e-215 752.7 469 85.1
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.9e-215 751.9 469 82.7
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.5e-214 749.6 469 82.3
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 5.6e-214 747.7 469 82.9
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 2.1e-213 745.7 470 82.6
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 2.1e-213 745.7 470 82.6
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.1e-213 745.7 469 82.5
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 5.2e-212 741.1 497 78.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 8.9e-212 740.3 470 83.8
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.2e-211 740.0 471 82.2
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.2e-211 740.0 469 83.2
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 7.5e-211 737.3 469 81.9
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 9.8e-211 736.9 493 78.7
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 3.5e-208 728.4 441 86.4
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.5e-206 723.0 491 79.0
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.5e-206 722.2 470 82.1
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 3.1e-204 715.3 492 78.3
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 9.8e-203 710.3 418 89.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 9.8e-203 710.3 418 89.2
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 9.2e-201 703.7 418 88.3
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.6e-195 685.6 470 80.6
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.4e-195 684.9 397 90.4
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 8.3e-194 680.6 418 87.1
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.9e-191 671.8 461 78.3
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.2e-189 666.8 423 83.5
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.1e-188 662.1 469 78.0
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.9e-186 655.6 383 89.6
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 2.9e-186 655.6 469 71.6
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 2.4e-185 652.5 374 91.7
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.1e-172 610.5 365 90.1
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 2.2e-170 602.8 373 84.2
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.8e-167 593.2 340 92.4
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 6.7e-167 591.3 350 88.0
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 2.1e-165 586.3 465 65.4
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 4.5e-163 578.6 469 69.1
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 3.8e-162 575.5 470 62.1
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.1e-156 557.4 324 92.0
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.7e-138 496.9 312 79.8
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.7e-136 489.6 308 86.0
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-129 466.5 365 70.1
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.3e-127 459.9 324 77.8
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.3e-111 406.8 246 87.4
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 4.3e-89 332.8 312 63.8
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 9.8e-86 321.6 238 74.4
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.4e-84 315.8 182 85.2
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.6e-82 308.9 173 89.0
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.1e-80 303.9 301 56.5
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.1e-79 301.6 505 38.4
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.4e-71 273.9 210 61.0
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.2e-70 271.6 294 54.1
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 9.3e-68 261.9 160 87.5
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 5.4e-60 236.1 195 70.8
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 3.5e-59 233.4 138 90.6
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.9e-58 229.9 407 41.8
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 4.5e-54 216.5 119 95.8
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.3e-48 198.4 328 39.0
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 5.3e-47 193.0 499 30.3
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.0e-45 188.7 111 89.2
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.2e-43 181.8 107 79.4
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 7.9e-43 179.1 115 85.2
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.6e-40 171.4 105 79.0
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-38 164.9 91 92.3
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.9e-30 136.3 76 90.8
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 5.5e-28 129.8 74 86.5
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 3.6e-27 127.1 72 84.7
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.0e-26 125.6 81 79.0
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.0e-26 125.6 72 84.7
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.1e-26 123.2 74 82.4
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 2.0e-25 121.3 72 80.6
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 2.8e-24 117.5 79 74.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 6.9e-23 112.8 99 64.6
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 4.2e-20 103.6 57 86.0
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 4.7e-19 100.1 57 80.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.6e-14 85.1 57 82.5
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.6e-14 84.3 52 90.4
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 4.5e-14 83.6 52 84.6
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 46 97.8
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 8.5e-13 79.3 74 60.8
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 4.2e-12 77.0 44 90.9
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 3.5e-06 57.4 33 87.9


User provided reference genes

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