Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 0.0e+00 2292.7 1336 100.0
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 0.0e+00 1787.7 1302 84.8
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 0.0e+00 1701.8 1331 75.7
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 0.0e+00 1642.5 1328 76.1
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 0.0e+00 1204.9 1336 62.3
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 0.0e+00 1172.1 1372 59.4
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 0.0e+00 1146.0 1339 58.5
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 0.0e+00 1142.5 1355 59.7
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 0.0e+00 1128.6 1354 59.2
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 0.0e+00 1109.0 1350 55.6
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 0.0e+00 1105.9 1341 62.8
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 0.0e+00 1083.2 1341 59.4
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 2.1e-194 684.1 1524 41.1
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 1.1e-187 661.8 1559 41.1
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 2.0e-179 634.4 1408 41.3
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 4.5e-160 570.1 1525 39.9
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 2.1e-157 561.2 1488 38.2
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.2e-154 551.2 1443 39.2
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 3.7e-154 550.4 1413 40.1
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 8.3e-154 549.3 1568 36.9
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 4.1e-153 547.0 1394 39.3
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 2.0e-152 544.7 1360 38.8
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 5.9e-152 543.1 1424 40.2
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 1.7e-151 541.6 1676 38.1
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.8e-151 540.4 1435 37.8
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 6.5e-151 539.7 1511 41.3
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.9e-150 538.1 1432 38.8
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.2e-150 537.0 1464 37.6
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 4.0e-148 530.4 1477 37.6
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 4.0e-148 530.4 1483 40.7
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.2e-148 530.0 1414 37.6
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 4.4e-147 526.9 1555 38.6
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 8.3e-146 522.7 1442 36.8
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.8e-143 513.8 1449 35.5
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.6e-141 508.4 1436 37.3
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 8.0e-141 506.1 1588 37.5
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 8.0e-141 506.1 1588 37.5
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 8.0e-141 506.1 1588 37.5
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 3.0e-140 504.2 1501 36.9
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.2e-139 502.3 1432 36.4
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 2.9e-138 497.7 1567 37.8
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 9.2e-137 492.7 1403 38.2
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.4e-123 447.2 1429 36.8
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 2.7e-120 438.0 1566 36.1
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.0e-119 436.0 1682 35.4
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 3.6e-117 427.6 1539 34.5
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.9e-113 415.2 1470 34.3
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 7.8e-112 409.8 1779 34.2
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.0e-111 409.5 1512 36.4
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 3.9e-111 407.5 1333 33.0
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 6.6e-111 406.8 1770 34.3
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 1.4e-105 389.0 1474 34.9
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 3.3e-102 377.9 1524 32.3
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 1.4e-100 372.5 1454 34.7
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 9.0e-100 369.8 1426 33.3
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.2e-98 365.2 1691 35.5
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 3.8e-98 364.4 1453 33.4
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 2.4e-97 361.7 1510 33.1
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 2.4e-97 361.7 1459 32.0
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 1.8e-95 355.5 1394 35.7
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 5.1e-95 354.0 1489 31.4
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 1.8e-92 345.5 1400 34.1
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 2.4e-92 345.1 1406 33.4
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 9.0e-92 343.2 1396 31.9
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 3.4e-91 341.3 1502 34.8
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.9e-89 335.5 1391 33.4
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 1.8e-87 328.9 985 38.9
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 4.3e-86 324.3 1488 33.1
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 1.3e-85 322.8 1340 32.5
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 2.8e-85 321.6 1351 35.8
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 5.3e-84 317.4 1352 30.2
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 8.4e-82 310.1 1090 32.6
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.7e-80 305.1 1158 31.8
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.8e-79 302.4 1508 29.4
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.0e-79 301.6 172 83.1
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 1.1e-78 299.7 1363 34.3
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 3.3e-78 298.1 687 44.4
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 2.8e-77 295.0 1410 29.3
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 5.3e-76 290.8 1111 29.8
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 3.4e-75 288.1 176 77.3
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 4.5e-75 287.7 1340 31.7
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 2.7e-72 278.5 1381 32.7
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 8.2e-69 266.9 169 71.6
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 7.7e-67 260.4 1655 30.0
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 7.7e-67 260.4 779 42.5
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 7.2e-65 253.8 278 51.4
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 4.7e-64 251.1 966 35.3
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.9e-63 248.1 1030 34.5
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 2.0e-62 245.7 140 79.3
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 5.7e-62 244.2 1067 32.5
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 2.4e-60 238.8 376 47.1
Psat7g193760 Pisum sativum HOM05D005457 ORTHO05D006350 2.0e-59 235.7 254 60.6
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.2e-56 226.5 932 31.0
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 5.2e-55 221.1 1397 29.7
Psat6g076520 Pisum sativum HOM05D005457 ORTHO05D006350 2.6e-54 218.8 259 55.6
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 2.4e-52 212.2 254 47.6
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 1.7e-50 206.1 174 56.3
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.7e-50 206.1 133 79.7
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 2.9e-50 205.3 1135 28.4
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 6.5e-50 204.1 1335 33.8
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 4.0e-47 194.9 180 53.3
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.7e-46 191.0 107 83.2
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 2.4e-44 185.7 103 76.7
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 7.7e-43 180.6 685 30.4
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.3e-42 179.9 480 35.4
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.5e-41 176.4 405 37.5
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 4.2e-41 174.9 509 31.6
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.7e-40 172.2 309 47.2
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.5e-38 166.4 164 50.6
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 7.0e-36 157.5 190 45.3
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.6e-35 156.4 122 61.5
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 7.7e-35 154.1 137 52.6
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 8.6e-34 150.6 115 62.6
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 7.2e-33 147.5 1007 28.1
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 2.1e-32 146.0 688 34.0
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 3.6e-32 145.2 87 72.4
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 4.0e-31 141.7 69 88.4
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 4.0e-31 141.7 69 88.4
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 8.6e-26 124.0 1030 24.9
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 4.3e-25 121.7 638 27.4
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 5.8e-22 111.3 753 25.1
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 4.9e-21 108.2 127 46.5
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.4e-21 107.8 96 58.3
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.1e-17 97.1 220 33.2
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 9.5e-17 94.0 144 31.2
Psat0s732g0040 Pisum sativum HOM05D005457 ORTHO05D006350 2.1e-16 92.8 118 54.2
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 6.2e-16 91.3 131 35.1
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 6.2e-16 91.3 140 27.9
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 3.1e-15 89.0 62 62.9
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.5e-14 86.7 255 28.2
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-14 86.7 115 34.8
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 2.0e-14 86.3 114 36.8
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 7.5e-14 84.3 114 35.1
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 4.6e-11 75.1 54 59.3
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 3.6e-08 65.5 388 25.5
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 4.0e-07 62.0 43 65.1


User provided reference genes

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