Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 1.5e-87 326.2 176 100.0
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 3.5e-60 235.3 135 94.8
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 1.9e-58 229.6 130 96.2
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 4.7e-57 224.9 130 93.1
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 6.1e-57 224.6 130 92.3
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 8.0e-57 224.2 130 93.1
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 3.0e-56 222.2 127 95.3
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 6.8e-56 221.1 130 90.8
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 2.0e-55 219.5 130 90.0
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 9.8e-55 217.2 129 90.7
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 1.8e-53 213.0 129 89.1
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 2.4e-53 212.6 129 89.1
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 2.4e-53 212.6 129 89.9
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 7.0e-53 211.1 129 89.1
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 2.0e-52 209.5 129 85.3
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 2.0e-52 209.5 129 85.3
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 2.7e-52 209.1 132 84.8
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 3.5e-52 208.8 129 87.6
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 3.5e-52 208.8 129 86.0
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 3.5e-52 208.8 129 86.8
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.6e-52 208.4 129 86.8
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 4.6e-52 208.4 129 86.8
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 7.8e-52 207.6 129 86.8
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.3e-51 206.8 129 86.0
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.3e-51 206.8 129 85.3
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.7e-51 206.5 127 87.4
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 3.9e-51 205.3 125 86.4
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 3.9e-51 205.3 129 84.5
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 3.9e-51 205.3 129 86.0
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 3.9e-51 205.3 129 86.0
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 5.0e-51 204.9 129 85.3
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 5.0e-51 204.9 129 86.8
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 6.6e-51 204.5 130 81.5
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 6.6e-51 204.5 129 84.5
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 6.6e-51 204.5 130 83.8
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 6.6e-51 204.5 125 86.4
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 1.1e-50 203.8 129 82.2
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 1.5e-50 203.4 129 84.5
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 1.5e-50 203.4 129 85.3
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 1.5e-50 203.4 126 85.7
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 1.9e-50 203.0 124 86.3
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 1.9e-50 203.0 133 82.7
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 1.9e-50 203.0 129 83.7
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 2.5e-50 202.6 125 86.4
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.5e-50 202.6 129 84.5
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.5e-50 202.6 129 84.5
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.5e-50 202.6 129 85.3
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.5e-50 202.6 129 84.5
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 3.3e-50 202.2 137 79.6
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 3.3e-50 202.2 129 85.3
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 4.3e-50 201.8 129 84.5
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 5.6e-50 201.4 133 83.5
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 5.6e-50 201.4 125 85.6
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 7.3e-50 201.1 129 80.6
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 7.3e-50 201.1 136 83.1
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 7.3e-50 201.1 129 82.2
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 7.3e-50 201.1 129 83.7
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 9.5e-50 200.7 129 83.7
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 1.2e-49 200.3 129 82.2
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.2e-49 200.3 129 84.5
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.2e-49 200.3 129 83.7
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 1.2e-49 200.3 125 84.0
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.6e-49 199.9 129 81.4
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.6e-49 199.9 129 83.7
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 1.8e-48 196.4 138 79.0
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 2.3e-48 196.1 129 81.4
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.0e-48 195.3 132 81.1
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 5.2e-48 194.9 129 79.1
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 5.2e-48 194.9 129 79.1
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 5.2e-48 194.9 129 79.1
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 5.2e-48 194.9 129 82.9
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 1.5e-47 193.4 112 91.1
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 2.0e-47 193.0 129 78.3
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 2.0e-47 193.0 129 78.3
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 3.7e-46 188.7 133 77.4
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 6.4e-46 188.0 129 79.1
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 8.3e-46 187.6 140 75.7
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.9e-45 186.4 127 77.2
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.9e-45 186.4 142 73.9
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 4.1e-45 185.3 184 62.0
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 4.1e-45 185.3 129 74.4
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 5.4e-45 184.9 111 87.4
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 2.0e-44 183.0 120 83.3
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.0e-44 183.0 127 75.6
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 1.3e-43 180.3 111 85.6
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.0e-43 178.3 123 79.7
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.5e-42 176.8 130 71.5
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.5e-42 176.0 123 78.9
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 3.3e-42 175.6 104 90.4
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 4.3e-42 175.3 110 84.5
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 7.3e-42 174.5 113 81.4
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 9.5e-42 174.1 104 89.4
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.2e-41 173.7 117 82.1
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 1.6e-41 173.3 123 78.9
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 1.6e-41 173.3 141 71.6
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 2.8e-41 172.6 107 84.1
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 4.7e-41 171.8 108 82.4
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 8.1e-41 171.0 119 72.3
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 1.1e-40 170.6 125 74.4
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 4.0e-40 168.7 109 79.8
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 5.2e-40 168.3 111 78.4
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 1.2e-39 167.2 145 68.3
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 9.9e-39 164.1 109 78.0
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 1.3e-38 163.7 104 80.8
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.3e-38 163.7 104 81.7
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 6.4e-38 161.4 127 71.7
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 1.9e-37 159.8 131 70.2
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 2.4e-37 159.5 126 71.4
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 1.2e-36 157.1 113 73.5
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 1.2e-36 157.1 124 63.7
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 2.3e-35 152.9 162 56.8
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 2.3e-35 152.9 122 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 5.1e-35 151.8 148 55.4
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 6.6e-35 151.4 87 93.1
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 1.9e-34 149.8 90 85.6
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 3.3e-34 149.1 89 87.6
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 3.3e-34 149.1 90 85.6
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 4.3e-34 148.7 90 85.6
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 7.3e-34 147.9 87 86.2
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 7.3e-34 147.9 122 68.0
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 7.3e-34 147.9 119 67.2
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 1.2e-33 147.1 90 86.7
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 3.6e-33 145.6 90 84.4
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 4.7e-33 145.2 84 88.1
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 5.2e-32 141.7 88 85.2
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 2.0e-31 139.8 111 73.9
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 5.8e-31 138.3 129 65.9
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 5.8e-31 138.3 93 77.4
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 9.9e-31 137.5 107 61.7
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 3.8e-30 135.6 90 77.8
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.4e-29 133.7 92 75.0
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.6e-28 130.2 95 76.8
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 7.8e-28 127.9 100 71.0
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 8.1e-25 117.9 77 83.1
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 1.8e-24 116.7 71 83.1
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 1.2e-23 114.0 90 71.1
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 2.6e-23 112.8 90 71.1
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 3.8e-22 109.0 63 88.9
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.9e-22 108.6 102 60.8
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.4e-21 106.3 61 88.5
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 1.0e-19 100.9 116 46.6
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 1.5e-18 97.1 109 56.0
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 1.9e-18 96.7 67 71.6
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 5.6e-18 95.1 64 73.4
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.6e-17 93.6 64 71.9
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 2.1e-17 93.2 116 41.4
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 3.6e-17 92.4 66 69.7
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 8.1e-17 91.3 66 69.7
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.8e-16 90.1 65 70.8
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 1.5e-15 87.0 68 64.7
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 3.8e-14 82.4 51 84.3
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 4.9e-14 82.0 112 41.1
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 6.7e-11 71.6 123 35.0
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 3.7e-09 65.9 51 72.5
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 3.1e-08 62.8 119 37.0


User provided reference genes

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