Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.2e-180 636.3 314 100.0
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 6.4e-174 614.0 315 96.8
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.2e-166 589.0 315 91.1
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 6.4e-166 587.4 315 92.7
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 7.1e-165 583.9 315 92.1
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 6.0e-164 580.9 315 90.2
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 3.0e-163 578.6 315 89.5
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 5.1e-163 577.8 315 90.5
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.5e-162 575.5 315 89.2
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 7.4e-162 573.9 315 90.2
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 9.6e-162 573.5 315 90.5
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 9.6e-162 573.5 315 91.1
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.3e-161 573.2 316 89.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 1.3e-161 573.2 314 89.2
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 6.2e-161 570.9 313 90.1
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.8e-160 569.3 315 87.6
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.8e-160 569.3 315 88.3
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 2.4e-160 568.9 315 87.9
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.4e-160 568.9 315 88.3
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 3.1e-160 568.5 315 88.6
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 6.9e-160 567.4 315 87.9
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.0e-159 565.8 315 87.6
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.6e-159 565.5 315 87.3
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.6e-159 565.5 315 87.9
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.6e-159 565.5 316 88.6
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 3.4e-159 565.1 315 89.5
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 5.8e-159 564.3 315 87.6
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 5.8e-159 564.3 313 87.2
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 7.6e-159 563.9 314 88.2
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.0e-158 563.5 315 87.6
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.7e-158 562.8 315 87.6
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 2.2e-158 562.4 315 86.7
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 2.9e-158 562.0 316 85.8
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 6.5e-158 560.8 315 87.0
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 6.5e-158 560.8 315 87.9
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.4e-157 559.7 315 87.0
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.2e-157 558.5 313 86.6
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.2e-157 558.5 315 86.3
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 4.2e-157 558.1 317 87.7
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 4.2e-157 558.1 314 87.6
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.2e-157 558.1 315 86.7
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 5.5e-157 557.8 313 88.5
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 1.2e-156 556.6 315 86.7
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.6e-156 556.2 308 89.3
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 3.5e-156 555.1 315 86.3
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 84.4
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 85.4
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 6.0e-156 554.3 315 86.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.9e-156 553.9 315 85.4
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.9e-156 553.9 315 85.7
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.8e-155 552.7 315 87.3
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 3.9e-155 551.6 313 85.9
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.1e-155 551.2 311 85.9
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 6.7e-155 550.8 315 85.4
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 8.7e-155 550.4 330 83.0
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 1.5e-154 549.7 315 84.1
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.5e-154 549.7 315 85.7
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 1.5e-154 549.7 317 85.8
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 5.7e-154 547.7 315 85.1
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 5.7e-154 547.7 338 80.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 5.7e-154 547.7 316 84.8
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 9.6e-154 547.0 308 88.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 9.6e-154 547.0 316 85.4
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.3e-153 546.6 317 85.5
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 3.7e-153 545.0 322 84.2
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 4.8e-153 544.7 315 84.1
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 8.2e-153 543.9 314 84.4
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.1e-152 543.5 316 85.1
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.1e-152 543.5 315 83.8
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.4e-152 543.1 315 82.9
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 2.4e-152 542.3 316 86.1
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.4e-152 542.3 314 84.1
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.4e-152 542.3 316 85.1
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.4e-152 542.3 314 84.1
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 3.1e-152 542.0 315 83.8
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 3.1e-152 542.0 314 83.8
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 3.1e-152 542.0 316 84.8
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.1e-152 542.0 316 84.8
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 3.1e-152 542.0 314 83.8
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 3.1e-152 542.0 314 84.4
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.3e-152 541.2 316 84.5
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.3e-152 541.2 316 84.8
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.0e-152 540.4 316 84.5
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.0e-152 540.4 316 84.5
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.0e-152 540.4 316 84.5
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.5e-151 539.7 316 85.8
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.0e-151 539.3 315 86.0
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.6e-151 538.9 315 84.8
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.4e-151 538.5 316 84.8
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 5.8e-151 537.7 315 81.9
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 5.8e-151 537.7 314 84.1
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.0e-150 537.0 314 84.4
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 1.0e-150 537.0 315 83.8
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.2e-150 535.8 316 84.2
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.8e-150 535.0 315 82.5
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.4e-149 533.1 316 82.9
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.4e-149 533.1 316 82.9
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 2.5e-149 532.3 315 84.4
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 7.1e-149 530.8 316 82.6
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 9.3e-149 530.4 316 83.5
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 1.2e-148 530.0 315 81.3
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.1e-148 529.3 316 82.0
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 1.3e-147 526.6 319 80.6
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.8e-147 526.2 309 83.5
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.8e-147 526.2 383 72.3
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 3.0e-147 525.4 315 82.9
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.8e-145 518.8 306 84.6
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 8.2e-145 517.3 339 76.4
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.4e-144 515.8 314 81.2
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 5.3e-144 514.6 314 83.1
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 4.5e-143 511.5 314 81.2
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 5.9e-143 511.1 310 80.6
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.7e-142 509.6 321 79.4
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.2e-142 509.2 310 80.6
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.4e-141 506.5 312 81.7
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 6.1e-140 501.1 285 84.9
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 1.1e-138 496.9 320 76.2
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 4.3e-138 495.0 313 79.6
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.3e-137 493.4 313 79.2
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 8.2e-137 490.7 283 84.5
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 1.4e-136 490.0 294 79.3
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 2.4e-136 489.2 288 83.3
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.5e-135 486.5 326 75.5
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.9e-133 479.6 282 83.3
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 4.2e-133 478.4 309 76.4
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 1.0e-131 473.8 463 57.7
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 4.4e-130 468.4 313 74.8
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.3e-126 456.8 320 71.6
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 1.8e-123 446.4 313 70.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 7.5e-122 441.0 262 85.5
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.9e-118 429.1 283 73.5
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 8.5e-118 427.6 313 68.4
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.1e-116 422.9 240 85.4
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.2e-97 359.8 213 81.7
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 3.1e-83 312.8 252 61.1
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.7e-81 307.0 191 78.0
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.4e-75 287.3 173 80.3
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.8e-75 287.0 309 49.8
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.8e-75 287.0 177 78.0
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 5.8e-74 282.0 313 49.2
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 8.4e-73 278.1 167 82.0
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.2e-71 274.2 274 54.7
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.7e-65 253.8 189 65.1
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 2.9e-65 253.1 185 72.4
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.3e-62 244.2 151 77.5
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.3e-62 244.2 151 77.5
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 6.2e-60 235.3 299 44.8
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 4.0e-59 232.6 279 48.7
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 6.9e-59 231.9 112 97.3
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 5.4e-56 222.2 307 40.7
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.2e-55 221.1 184 62.0
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 9.3e-48 194.9 305 43.3
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.5e-45 187.6 113 77.9
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.5e-45 187.6 113 77.9
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 1.3e-44 184.5 113 77.0
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.8e-44 183.3 137 69.3
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.7e-44 183.0 103 84.5
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 8.1e-44 181.8 126 70.6
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.5e-42 176.0 149 63.8
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.1e-40 171.4 142 63.4
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 3.0e-38 163.3 170 55.9
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.5e-37 160.2 179 52.5
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.8e-35 154.1 276 35.5
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 2.5e-32 143.7 108 66.7
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.1e-30 136.0 116 63.8
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 5.7e-29 132.5 114 65.8
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.5e-26 124.4 68 82.4
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 2.9e-25 120.2 80 73.8
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 2.9e-25 120.2 80 73.8
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 1.9e-24 117.5 59 91.5
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 1.8e-22 110.9 72 70.8
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 2.4e-19 100.5 154 39.6
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 4.1e-19 99.8 53 90.6
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 6.5e-17 92.4 53 81.1
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-16 91.7 47 89.4
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 2.1e-15 87.4 52 80.8
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.0e-14 83.6 90 56.7
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 2.4e-11 73.9 102 47.1
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 5.3e-11 72.8 44 79.5
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 3.6e-07 60.1 37 64.9
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 1.8e-06 57.8 36 72.2
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 3.0e-06 57.0 37 62.2
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 6.7e-06 55.8 33 78.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 6.7e-06 55.8 33 78.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 6.7e-06 55.8 33 78.8


User provided reference genes

Program Settings