Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 8.1e-210 733.4 351 100.0
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.8e-156 556.2 351 78.9
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.0e-132 477.2 359 66.3
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.2e-115 420.6 355 62.0
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 5.4e-113 411.8 371 59.3
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 7.8e-112 407.9 357 61.9
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.2e-107 394.0 352 61.1
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.6e-101 373.6 353 56.1
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.7e-98 363.6 353 55.2
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 9.3e-81 304.7 375 43.7
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.6e-77 293.9 366 44.5
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 3.1e-76 289.7 369 42.5
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.5e-75 287.3 371 43.1
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 3.4e-75 286.2 370 43.5
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 3.8e-74 282.7 390 41.8
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 5.0e-74 282.3 377 41.4
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 6.5e-74 282.0 369 42.5
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 8.4e-74 281.6 367 40.9
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.9e-73 280.4 369 42.5
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 3.0e-71 273.1 364 41.8
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.1e-71 272.3 364 41.8
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 1.1e-70 271.2 221 67.9
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 2.5e-70 270.0 349 44.1
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.3e-69 267.7 370 40.0
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-69 267.7 372 40.3
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 8.2e-69 265.0 412 37.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 5.3e-68 262.3 345 43.5
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 9.0e-68 261.5 409 38.4
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 1.2e-67 261.2 361 41.8
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.2e-67 261.2 354 41.5
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.5e-67 260.8 381 39.9
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 3.4e-67 259.6 353 41.4
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 3.4e-67 259.6 368 41.6
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 5.9e-67 258.8 372 40.1
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 5.9e-67 258.8 365 39.2
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 1.0e-66 258.1 299 44.1
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-66 257.3 354 40.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.0e-66 255.8 352 42.3
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.0e-66 255.8 389 37.5
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.5e-66 255.4 354 41.0
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 2.5e-65 253.4 379 37.7
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.2e-65 253.1 380 39.7
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 5.5e-65 252.3 378 41.0
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.5e-65 252.3 438 34.7
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 9.4e-65 251.5 362 38.4
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.2e-64 251.1 195 56.9
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.1e-64 250.4 338 40.8
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.7e-64 250.0 174 62.6
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 4.6e-64 249.2 376 38.6
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 7.9e-64 248.4 358 40.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.4e-63 247.7 365 39.5
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 2.3e-63 246.9 375 39.2
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 5.1e-63 245.7 401 36.9
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.0e-62 243.8 360 38.6
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 2.5e-62 243.4 347 39.2
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.5e-62 243.4 349 39.5
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 4.3e-62 242.7 368 39.7
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.7e-61 240.7 405 37.8
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 3.7e-61 239.6 387 37.2
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.8e-60 237.3 466 33.7
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.5e-59 234.2 202 51.0
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 5.9e-59 232.3 310 43.5
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 7.7e-59 231.9 346 40.5
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 2.9e-58 229.9 444 36.9
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-57 228.0 366 38.5
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 4.2e-57 226.1 163 69.3
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 4.2e-57 226.1 351 37.3
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 1.2e-56 224.6 382 37.4
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.6e-56 224.2 370 35.1
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-55 220.7 367 37.1
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 2.3e-55 220.3 352 37.5
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.0e-55 219.9 366 36.6
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 6.7e-55 218.8 361 36.0
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 4.4e-54 216.1 443 32.7
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.7e-54 214.9 442 32.4
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.2e-53 213.8 343 35.0
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.4e-52 211.1 173 50.9
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.2e-51 208.0 306 39.9
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-51 207.6 172 53.5
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-50 204.5 367 35.1
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-49 200.7 424 32.8
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.5e-49 200.3 378 33.9
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-49 199.5 254 42.9
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 5.5e-49 199.1 171 50.3
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.2e-48 198.0 327 36.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.6e-48 197.6 213 44.6
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.4e-47 194.5 325 36.6
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-47 194.5 198 48.5
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-47 194.1 377 31.8
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.0e-47 193.4 325 33.5
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 4.0e-47 193.0 379 33.2
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.2e-47 192.6 268 39.6
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 8.8e-47 191.8 260 38.5
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 1.1e-46 191.4 244 41.0
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-46 191.0 317 38.2
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.6e-46 190.3 344 35.5
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.6e-46 190.3 171 51.5
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 3.3e-46 189.9 198 46.0
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 5.7e-46 189.1 362 34.8
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.4e-46 188.7 344 33.1
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.3e-45 188.0 323 34.1
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 2.2e-45 187.2 341 34.0
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-45 187.2 298 38.9
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 5.3e-44 182.6 344 32.8
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 5.3e-44 182.6 239 43.1
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 5.3e-44 182.6 342 31.9
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 7.0e-44 182.2 393 33.3
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.2e-43 181.4 343 31.5
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 2.0e-43 180.6 155 52.3
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-41 174.5 173 44.5
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.5e-41 174.5 348 30.7
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-41 173.7 347 32.6
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-41 173.7 347 32.6
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 7.2e-41 172.2 171 44.4
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.2e-40 171.4 171 46.8
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.6e-40 171.0 326 33.7
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.1e-40 170.6 289 36.3
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.7e-40 170.2 172 45.9
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 8.0e-40 168.7 330 33.9
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.5e-38 164.5 344 33.1
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 9.8e-38 161.8 351 32.2
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 2.2e-37 160.6 358 32.4
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-36 157.5 328 31.7
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-36 157.5 328 32.3
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 3.1e-36 156.8 199 42.2
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 4.1e-36 156.4 173 42.2
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.6e-35 154.5 269 34.6
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 5.9e-35 152.5 173 41.6
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 7.7e-35 152.1 173 41.0
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 7.7e-35 152.1 173 41.0
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.0e-34 151.8 173 41.6
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.6e-32 144.4 128 51.6
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.1e-32 144.1 172 41.9
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 6.1e-32 142.5 150 44.7
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 5.2e-31 139.4 149 45.6
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.0e-30 137.5 214 36.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 7.5e-30 135.6 172 38.4
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 9.8e-30 135.2 274 32.5
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 4.1e-28 129.8 146 40.4
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 5.4e-28 129.4 146 40.4
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 5.4e-28 129.4 146 40.4
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 9.1e-28 128.6 94 56.4
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.0e-27 127.5 275 30.9
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.3e-26 124.8 115 50.4
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 6.6e-26 122.5 279 29.0
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 7.2e-25 119.0 198 34.3
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.2e-25 119.0 103 53.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 3.6e-24 116.7 181 35.9
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.4e-23 114.8 146 39.0
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 7.5e-22 109.0 118 42.4
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.9e-21 106.3 285 30.5
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.2e-19 101.7 140 37.9
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.0e-19 100.9 177 31.6
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.7e-18 97.8 72 52.8
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 2.1e-16 90.9 128 37.5
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 1.5e-14 84.7 240 30.8
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 8.3e-13 79.0 64 56.2
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 5.4e-12 76.3 243 27.6
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.0e-11 74.3 133 30.8
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 2.7e-11 73.9 129 38.0
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 1.3e-10 71.6 49 59.2
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 3.9e-10 70.1 44 63.6
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.3e-09 66.6 55 52.7
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 9.5e-09 65.5 249 25.7
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 9.5e-09 65.5 249 25.7
PGR031G1519 Punica granatum HOM05D001580 ORTHO05D001517 2.8e-08 63.9 166 31.3
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 2.3e-07 60.8 60 43.3
arahy.Tifrunner.gnm1.ann1.5SY970 Arachis hypogaea HOM05D002784 ORTHO05D031482 3.1e-07 60.5 126 30.2
Glyma.18G302200 Glycine max HOM05D000966 ORTHO05D002384 3.1e-07 60.5 30 80.0
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.2e-06 58.5 109 33.0
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 1.5e-06 58.2 83 39.8


User provided reference genes

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